Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0312.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces ...    27   1.8  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   4.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    24   9.4  

>SPAC13G6.05c |||TRAPP complex subunit Bet3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 420 SNTFFYWKVKYRIKTKTRVVNITSVY 343
           ++T+FYW  K    T T +  IT+ Y
Sbjct: 102 TDTYFYWFTKMTAMTGTEMAQITTPY 127


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 174 SLIF*VIKSKKIQYTVLLISLNYIRRCART 263
           SL+   IK   + + VLLISLN I+  + T
Sbjct: 538 SLLKQYIKDSHVHHEVLLISLNLIKEASDT 567


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 427 KSQQHIFLLESKIQN*NKNTGS*HYKCIP 341
           K   H+++L+SKI    +N G   + CIP
Sbjct: 683 KHSNHLYILQSKISQQFQNDGI--FACIP 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,541,510
Number of Sequences: 5004
Number of extensions: 26395
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)