Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0312.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0202 - 1638978-1639571                                           30   0.99 
01_06_0582 + 30392297-30392677,30393786-30394039,30394175-303942...    29   1.3  
02_05_0059 - 25482207-25482271,25482432-25482651                       29   2.3  
05_04_0286 + 19833114-19834053,19834149-19834165                       28   3.0  
12_02_0384 + 18409831-18409843,18410378-18410471,18410614-184107...    27   5.3  
11_06_0334 + 22437187-22437322,22437430-22437515,22437927-224380...    27   7.0  
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830     27   7.0  

>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 29.9 bits (64), Expect = 0.99
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   GGDQREGGANGGDGNCSNC 58
           GG  R GG  GG G C NC
Sbjct: 164 GGGYRGGGGGGGGGGCYNC 182


>01_06_0582 +
           30392297-30392677,30393786-30394039,30394175-30394298,
           30394484-30394588,30395913-30396035
          Length = 328

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -2

Query: 184 KIKLGSVLSTACRRGCRTTAGSCYGRTAASCRC 86
           KIK    L  A +RG R   GS  G +AA C C
Sbjct: 135 KIKQKEALGVAEKRGGRRGTGSVIGSSAAGCVC 167


>02_05_0059 - 25482207-25482271,25482432-25482651
          Length = 94

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 2   GGDQREGGANGGDGNCSNC 58
           GG    GG NGG G+C+ C
Sbjct: 61  GGSVGRGGNNGGGGSCAKC 79


>05_04_0286 + 19833114-19834053,19834149-19834165
          Length = 318

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 142 GCRTTAGSCYGRTAASCRCCGCSWAAFLAV 53
           G R  +G+ YG  AA   CC  SW A  AV
Sbjct: 179 GGRRPSGAAYG-AAAPPECCAVSWDAIRAV 207


>12_02_0384 +
           18409831-18409843,18410378-18410471,18410614-18410734,
           18411635-18412543,18412772-18413211,18413481-18414516
          Length = 870

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = +2

Query: 221 FAYFIKLYTSMCTNKSSLN--LAQCHL 295
           F Y I LY   CTN SS+   L  CH+
Sbjct: 682 FQYLINLYIIECTNLSSIEQFLQPCHI 708


>11_06_0334 +
           22437187-22437322,22437430-22437515,22437927-22438073,
           22438166-22438274,22439510-22439633,22439727-22439752,
           22439774-22440000,22440084-22440185
          Length = 318

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -2

Query: 157 TACRRGCRTTAGSCYG 110
           T C  GC TTAG C G
Sbjct: 212 TTCFEGCATTAGECGG 227


>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
          Length = 763

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/55 (23%), Positives = 22/55 (40%)
 Frame = -2

Query: 166 VLSTACRRGCRTTAGSCYGRTAASCRCCGCSWAAFLAVAAISISPICSTFSLVTS 2
           V+ ++C +  +   G C  R     RC  CS      +  + I P+ +  S   S
Sbjct: 240 VVCSSCNQLLQLPPGKCTARKQIQVRCGSCSEIVSFKLKEVKIHPLVAPTSFPAS 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,575,046
Number of Sequences: 37544
Number of extensions: 162475
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)