Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0312.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)            29   1.8  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      27   7.2  
SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)                    27   7.2  
SB_22471| Best HMM Match : EGF (HMM E-Value=1.8)                       27   9.5  
SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)                  27   9.5  

>SB_50933| Best HMM Match : Laminin_EGF (HMM E-Value=0.0069)
          Length = 233

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 172 GSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSW 71
           G +   AC   C    G C+G TA  C  C   W
Sbjct: 61  GKMSCKACHESC---FGGCHGGTAKDCSACKSGW 91


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = -2

Query: 166 VLSTACRRGCRTTAGSCYGRTAASCRCCGCSWAAFLAVAAISISPICSTFSLVTS 2
           V+  +CR  C +    CY    A C C    ++  +A  +  +   CS+  +V S
Sbjct: 225 VVCYSCRVACCSCRVVCYSCRVACCSCRVVCYSCRVACCSCRVHMKCSSCRVVCS 279


>SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)
          Length = 474

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -2

Query: 172 GSVLSTACRRGCRTTAGSCYGRTAASCRCCGCSWAAFL 59
           GS+ ST   +G R     CY  T A+    G SW   L
Sbjct: 287 GSMESTLIIKGVRIQDFGCYKCTVATSNGLGSSWVCLL 324


>SB_22471| Best HMM Match : EGF (HMM E-Value=1.8)
          Length = 145

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 179 DFLSDKI*KNTVHRFAYFIKLYTSMCTNKSSLNLAQCHLIFPYAFIF 319
           D L D+  +N    F          C   +     QCH +FPYA +F
Sbjct: 73  DSLVDRTLENCTEVFEAICSGEFGECEKTAQSYRDQCHSLFPYATLF 119


>SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)
          Length = 523

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 179 DFLSDKI*KNTVHRFAYFIKLYTSMCTNKSSLNLAQCHLIFPYAFIF 319
           D L D+  +N    F          C   +     QCH +FPYA +F
Sbjct: 388 DSLVDRTLENCTEVFEAICSGEFGECEKTAQSYRDQCHSLFPYATLF 434


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,387,895
Number of Sequences: 59808
Number of extensions: 191306
Number of successful extensions: 550
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)