Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0312.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 28 2.7
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 28 2.7
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 2.7
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 28 2.7
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 28 2.7
U80836-14|AAB37896.1| 185|Caenorhabditis elegans Hypothetical p... 27 4.8
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 27 4.8
Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z81132-7|CAB03428.1| 86|Caenorhabditis elegans Hypothetical pr... 27 6.3
U21324-12|AAA62559.1| 227|Caenorhabditis elegans Hypothetical p... 27 6.3
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 8.3
AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical... 27 8.3
AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical... 27 8.3
>Z81503-1|CAB04111.1| 305|Caenorhabditis elegans Hypothetical
protein F14F7.1 protein.
Length = 305
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 2 GGDQREGGANGGDGNCSNCQKGSP 73
G Q +GG GG G CS C + P
Sbjct: 85 GYAQPQGGGGGGGGQCSTCCRPGP 108
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = -2
Query: 151 CRRGCRTTAGSCYGRTAASCR--CCGC 77
CRR C C R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = -2
Query: 151 CRRGCRTTAGSCYGRTAASCR--CCGC 77
CRR C C R CR CCGC
Sbjct: 95 CRRCCTCCRTCCCTRCCTCCRPCCCGC 121
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = -2
Query: 157 TACRRGCRTTAGSCYGRTAASCRCCGC 77
T C C T C C CCGC
Sbjct: 104 TCCCTRCCTCCRPCCCGCGCGCGCCGC 130
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = -2
Query: 151 CRRGCRTTAGSCYGRTAASCR--CCGC 77
CRR C C R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = -2
Query: 157 TACRRGCRTTAGSCYGRTAASCRCCGC 77
T C C T C C CCGC
Sbjct: 105 TCCCTRCCTCCRPCCCGCGCGCGCCGC 131
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = -2
Query: 151 CRRGCRTTAGSCYGRTAASCR--CCGC 77
CRR C C R CR CCGC
Sbjct: 96 CRRCCTCCRTCCCTRCCTCCRPCCCGC 122
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = -2
Query: 157 TACRRGCRTTAGSCYGRTAASCRCCGC 77
T C C T C C CCGC
Sbjct: 105 TCCCTRCCTCCRPCCCGCGCGCGCCGC 131
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 28.3 bits (60), Expect = 2.7
Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Frame = -2
Query: 151 CRRGCRTTAGSCYGRTAASCR--CCGC 77
CRR C C R CR CCGC
Sbjct: 97 CRRCCTCCRTCCCTRCCTCCRPCCCGC 123
>U80836-14|AAB37896.1| 185|Caenorhabditis elegans Hypothetical
protein B0432.12 protein.
Length = 185
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 227 KQNGVLYFFRFYHLKNQTWFSAKHC 153
+ NG++ F + YHLK + KHC
Sbjct: 27 RSNGIVAFHKLYHLKMNFPRAKKHC 51
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +2
Query: 2 GGDQREGGANGGDGNCSNC 58
GG QR GG GG G+C NC
Sbjct: 56 GGGQRGGG--GGGGSCYNC 72
>Z81132-8|CAB03429.1| 90|Caenorhabditis elegans Hypothetical
protein T26E4.10 protein.
Length = 90
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Frame = -2
Query: 175 LGSVLSTACRRGCRTTAGSCYGRTA--------ASCRCCGCSW 71
LG ++ + GC C G T +C CCGC W
Sbjct: 46 LGQLIRAKRQWGCGCDCWGCCGPTPDPAATPAPCNCGCCGCGW 88
>Z81132-7|CAB03428.1| 86|Caenorhabditis elegans Hypothetical
protein T26E4.9 protein.
Length = 86
Score = 27.1 bits (57), Expect = 6.3
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%)
Frame = -2
Query: 175 LGSVLSTACRRGCRTTAGSCYGRTA--------ASCRCCGCSW 71
LG ++ + GC C G T +C CCGC W
Sbjct: 42 LGQLIRAKRQWGCGCDCWGCCGPTPDPAATPAPCNCGCCGCGW 84
>U21324-12|AAA62559.1| 227|Caenorhabditis elegans Hypothetical
protein C35D10.3 protein.
Length = 227
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 19 RWSKWGRWKLQQLPKR 66
RW K+ WKLQQL +R
Sbjct: 71 RWLKFTEWKLQQLAER 86
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = -2
Query: 157 TACRRGCRTTAGSCYGRTAASCRCCGC 77
T C C T C C CCGC
Sbjct: 90 TCCCTRCCTCCRPCCCGCGCGCGCCGC 116
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = -2
Query: 157 TACRRGCRTTAGSCYGRTAASCRCCGC 77
T C C T C C CCGC
Sbjct: 93 TCCCTRCCTCCRPCCCGCGCGCGCCGC 119
>AL021497-20|CAA16410.3| 1057|Caenorhabditis elegans Hypothetical
protein Y51A2D.7b protein.
Length = 1057
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 221 FAYFIKLYTSMCTNKSSLNLAQCHLIFPYAFI 316
FA+F KL T L CHLI P+ I
Sbjct: 320 FAFFFKLVTCSLKTLQILVNTNCHLITPFNVI 351
>AL021497-19|CAA16406.2| 989|Caenorhabditis elegans Hypothetical
protein Y51A2D.7a protein.
Length = 989
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 221 FAYFIKLYTSMCTNKSSLNLAQCHLIFPYAFI 316
FA+F KL T L CHLI P+ I
Sbjct: 320 FAFFFKLVTCSLKTLQILVNTNCHLITPFNVI 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,724,480
Number of Sequences: 27780
Number of extensions: 156536
Number of successful extensions: 563
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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