Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0312.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03870.2 68416.m00400 expressed protein predicted using genef...    27   5.9  
At3g43520.1 68416.m04614 expressed protein contains Pfam profile...    27   7.7  

>At3g03870.2 68416.m00400 expressed protein predicted using
           genefinder
          Length = 266

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 422 TATHFFIGK*NTEL-KQKHG*LTLQVYTVQMALFNQI*KHREKLNDIVLNL 273
           T   FF+G  N ++ K K+  L  Q+Y+       ++  H  KLN+ +  +
Sbjct: 197 TVCVFFLGHNNIKICKNKNQMLRFQIYSDDNKRMKEVVNHATKLNEAIFGM 247


>At3g43520.1 68416.m04614 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 240

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 2   GGDQREGGANGGDGN 46
           GGD+  GG  GGDGN
Sbjct: 101 GGDKFGGGGGGGDGN 115


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,342
Number of Sequences: 28952
Number of extensions: 133216
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)