Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0311.Seq
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 109 3e-25
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 109 3e-25
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 30 0.20
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 30 0.26
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 28 1.0
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 27 1.8
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.2
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.2
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.2
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.2
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.2
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro... 26 3.2
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 3.2
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.2
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 3.2
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.2
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.2
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.2
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.2
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 4.2
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 25 7.3
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|... 25 7.3
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 9.7
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch... 25 9.7
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 25 9.7
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 9.7
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 25 9.7
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 9.7
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 109 bits (262), Expect = 3e-25
Identities = 52/79 (65%), Positives = 59/79 (74%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 208 TGRVYNVTAHALGVIVTSV 264
TG VYNVT ++GV++ V
Sbjct: 61 TGVVYNVTQSSVGVLIYKV 79
Score = 91.1 bits (216), Expect = 1e-19
Identities = 42/61 (68%), Positives = 47/61 (77%)
Frame = +3
Query: 258 KRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKA 437
K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP
Sbjct: 78 KVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAT 137
Query: 438 A 440
A
Sbjct: 138 A 138
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 109 bits (262), Expect = 3e-25
Identities = 52/79 (65%), Positives = 59/79 (74%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 208 TGRVYNVTAHALGVIVTSV 264
TG VYNVT ++GV++ V
Sbjct: 61 TGVVYNVTQSSVGVLIYKV 79
Score = 91.9 bits (218), Expect = 6e-20
Identities = 46/71 (64%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Frame = +3
Query: 258 KRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPP-K 434
K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAKA GKTV L+RQPAPP K
Sbjct: 78 KVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAK 137
Query: 435 AATSSVELRNP 467
A S E P
Sbjct: 138 AHFVSTENNEP 148
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 30.3 bits (65), Expect = 0.20
Identities = 24/94 (25%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +1
Query: 214 RVYNVTAHALGVIVTSVSAEGLYRSASISVLSMSSTPSADKTSLRESKRM---RGY*RKP 384
RV ++ +H+ +TSV + S +++ S ++ S T+L + R R Y R P
Sbjct: 290 RVRDIRSHSTNTTITSVDSA----STALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSP 345
Query: 385 RLPARPST*RDSQLPLKLPHRQWN*ETRLTCAYP 486
+ PS R + L +P W R+ P
Sbjct: 346 LHGSSPSASRHTALRTSIPKFSWTPTPRVKSTAP 379
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 29.9 bits (64), Expect = 0.26
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Frame = +3
Query: 99 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSRCDCNKRVRGRI 278
+ L H SW + R+ C +KGY PW + Y D + + R+
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRV 258
Query: 279 IPKRINIRVEHVKHS-KCRQDFLKRVKENE 365
R +E +K S K L R +NE
Sbjct: 259 TKIRKEF-IEMLKSSDKIHSYTLWRTVKNE 287
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 27.9 bits (59), Expect = 1.0
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 140 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 24
S L+ F+ + IVPC+ + + ++P R EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 27.1 bits (57), Expect = 1.8
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 201 WKDRSRVQRYCSRSRCDCNKRVRGRIIPKRI--NIRVEHVKHSKCRQDFLKR 350
W D + RY R RVRGR+ K I N+++++ R + KR
Sbjct: 199 WPDALKSSRYAGIWRQGIPSRVRGRVWEKAIGNNLKLDYQSFFNARANAQKR 250
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 157 GNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVTSVSAEGL 279
G+ Q G +VY G+ V V + G ++T VS++GL
Sbjct: 468 GHAEFQPGDHVEVYVGEQTGVSGVVENVRGSVITMVSSDGL 508
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
6-
hydroxymethyldihydropteridinediphosphokinase/dihydroneop
terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -3
Query: 228 NVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 94
N + + C V H + T+ V N +H++ ERNS+
Sbjct: 81 NKIASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 324 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATS 446
K DF KR E +R+ +E A KTV L Q K T+
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQERHIKTKTT 221
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 345 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVELRNP 467
K +++ ER+ K + NL+R PPK T S P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.2
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKR-VKENER--LLKEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
NI + KH+ + + + VKE E + KE K N ++ P P K VEL
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDITAETNTEKLPKPIKGLEFEVELTQ 408
Query: 465 PSY 473
+Y
Sbjct: 409 ENY 411
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +3
Query: 372 LKEAKAAGKTVN---LKRQPAPPKAATSSVELRNPSYL 476
L E KA +T+ P PP +V L NPSY+
Sbjct: 93 LPEGKAGMQTLPGRPASNGPTPPNPGNGNVGLNNPSYM 130
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 25.0 bits (52), Expect = 7.3
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Frame = +3
Query: 357 ENERLLKEAKAAGKTVNLKRQPAPPKAATSSV-----ELRNPSYLR 479
EN R KEA + G R P PK +S+ ELRN LR
Sbjct: 123 ENRRRSKEAHSTGSRYYRLRHPDVPKKPSSAFILFYKELRNNPKLR 168
>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 7.3
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Frame = -1
Query: 437 SFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLNTDIDALRYN 276
SF+G W+ L + + G L G LQ + +++SL EV ++ + L+ ++RY+
Sbjct: 455 SFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLSRAFGSIRYS 512
>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 822
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +1
Query: 100 IPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKV---YHGKTGRVYNVTAHALGVIVTSVSA 270
+ + TY+ V D+ +++ +G V + + + Y T ++ N LG+++T +
Sbjct: 329 LAILTYL-VSPEADLNNMKSSGTVYFSVFNSLFFMYSKLTSKILNTLVGGLGILLTLRGS 387
Query: 271 EGLYRSASIS-VLSMS 315
EG + A I+ V+S++
Sbjct: 388 EGSFTVALIAQVISIA 403
>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 398 LAGSLGFLQ*PLILFDSLKEVLSALGV 318
LAG L F + LFD LKE+ GV
Sbjct: 22 LAGDLVFRPNAIELFDELKEICKDAGV 48
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +1
Query: 307 SMSSTPSADKTSLRE 351
SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = -1
Query: 422 WLSLQVDGLAGSLGF 378
WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Frame = +3
Query: 114 VHESVQSWRHCRHQRQWCSSKGYA---TQSIPWKDRSRVQRYCSRS 242
+ E S HC R WCSS A TQ + V +Y S S
Sbjct: 19 IEEPKLSCCHCETCRIWCSSPFMAFSCTQKPSVSENENVGKYASSS 64
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 24.6 bits (51), Expect = 9.7
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 369 LLKEAKAAGKTVNLKRQPAPPKAATSSVELRNPSYLRLSHTNS*RKVNKIFLRKKAAA 542
LL GKT+ K KA + + +R P L S R V ++FLR +A++
Sbjct: 530 LLWGPPGCGKTLLAKAVANESKA--NFISIRGPELLNKYVGESERAVRQVFLRARASS 585
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,640
Number of Sequences: 5004
Number of extensions: 43936
Number of successful extensions: 186
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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