Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0311.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0290 + 2246791-2247027,2248089-2248346 106 1e-23
10_08_0310 - 16669565-16669822,16670558-16670794 103 7e-23
07_01_0698 - 5269329-5269579,5270673-5270928,5271158-5271725,527... 33 0.20
06_03_1007 + 26869731-26870429,26871262-26871387 32 0.35
08_02_0830 - 21617485-21618198 29 3.2
05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975 29 3.2
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 3.2
03_02_0138 + 5837813-5838490,5839000-5839164,5839289-5839426,583... 28 4.3
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 5.6
12_01_0537 - 4215833-4216005,4216168-4216366,4216399-4216497,421... 27 7.5
08_01_0283 - 2304024-2304111,2304224-2304343,2304594-2304715,230... 27 7.5
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 27 7.5
02_02_0353 + 9276316-9276518,9276915-9277314 27 7.5
01_06_1794 - 39919363-39920025 27 7.5
07_03_1182 - 24610862-24611637,24612223-24612340,24612441-246141... 27 9.9
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 27 9.9
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 9.9
05_03_0549 - 15349259-15349346,15349466-15349585,15349899-153500... 27 9.9
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 27 9.9
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093... 27 9.9
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 106 bits (255), Expect = 1e-23
Identities = 52/111 (46%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 208 TGRVYNVTAHALGVIVTSVSAEGLYRS-ASISVLSMSSTPSADKTSLRESK 357
TGRV+NVT A+GV + + R + V + + ++ LR+ K
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIK 111
Score = 64.1 bits (149), Expect = 7e-11
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +3
Query: 249 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 428
+ NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAKARGEVISTKRQPEG 134
Query: 429 PK 434
PK
Sbjct: 135 PK 136
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 103 bits (248), Expect = 7e-23
Identities = 46/74 (62%), Positives = 56/74 (75%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 208 TGRVYNVTAHALGV 249
TGRV+NVT A+GV
Sbjct: 61 TGRVWNVTKRAIGV 74
Score = 66.5 bits (155), Expect = 1e-11
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = +3
Query: 249 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 428
+ NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AKA G+ ++ KRQP
Sbjct: 75 EINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAKARGEVISTKRQPQG 134
Query: 429 PK 434
PK
Sbjct: 135 PK 136
>07_01_0698 -
5269329-5269579,5270673-5270928,5271158-5271725,
5271757-5272763
Length = 693
Score = 32.7 bits (71), Expect = 0.20
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -3
Query: 267 GHACYNHTESVSSNVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRG 109
GH CY + VS+ +V+ C + T+L+C +A +Y + +F+ RG
Sbjct: 318 GH-CYGPLDPVSNIIVNTICFQWA-MISTTMLSCIVARSLYGLVSFLCTRYRG 368
>06_03_1007 + 26869731-26870429,26871262-26871387
Length = 274
Score = 31.9 bits (69), Expect = 0.35
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 247 VIVTSVSAEGLYRSASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARP 402
V+V V E Y S + + S S +AD + RG R+PR ARP
Sbjct: 54 VVVVEVEEEEGYESGASAASSTSCVSTADSDVAASAAARRGRRRRPRAAARP 105
>08_02_0830 - 21617485-21618198
Length = 237
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 321 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSS 449
S CR D ++R N+R L A +A + ++ ++P P K A S
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDAVGS 190
>05_07_0268 + 28830373-28830435,28830632-28830736,28831055-28831975
Length = 362
Score = 28.7 bits (61), Expect = 3.2
Identities = 23/82 (28%), Positives = 30/82 (36%)
Frame = +1
Query: 184 PHKVYHGKTGRVYNVTAHALGVIVTSVSAEGLYRSASISVLSMSSTPSADKTSLRESKRM 363
P G R +A AL I S RS +V+ P+ D ++ SK
Sbjct: 118 PRPKIDGSVRRRRRRSARALVHISIDCSGPTSARSVGAAVMPSPVAPAKDVKAVIRSKAR 177
Query: 364 RGY*RKPRLPARPST*RDSQLP 429
G R P ST D +LP
Sbjct: 178 GGRPRSPSYSCSSSTVTDDELP 199
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 127 YKVGDIVDIRGNGAVQKGMPHKVY 198
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>03_02_0138 +
5837813-5838490,5839000-5839164,5839289-5839426,
5839496-5839647,5839754-5839862,5840551-5840649,
5840739-5840804,5840891-5840998,5841820-5841906
Length = 533
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = +3
Query: 228 YCSRSRCDCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 380
Y SR + +V + +P+ +NI + ++HSK + ++R E + +L+E
Sbjct: 175 YTSREQTTYYAKVLDKDVPRALNILADILQHSKLEESRIER--ERDVILRE 223
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 5.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +3
Query: 312 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 419
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>12_01_0537 -
4215833-4216005,4216168-4216366,4216399-4216497,
4216599-4216809,4217264-4217466,4217557-4217633,
4217874-4217949,4218342-4218425
Length = 373
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +1
Query: 154 RGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVTSVSAEGLYRSASISVLSMS 315
RG+GA+ PHK Y K + HA G IV + A GL AS + L S
Sbjct: 287 RGDGAIYLRFPHKGYREK------IWDHAAGSIVVT-EAGGLVTDASGNDLDFS 333
>08_01_0283 -
2304024-2304111,2304224-2304343,2304594-2304715,
2304824-2305096,2305454-2305558,2305635-2305851,
2306012-2306262,2306518-2306724,2307087-2307351,
2308655-2308749
Length = 580
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 135 WRHCRHQRQWCSSKGYATQSIPWKDRSRV 221
W H QW YAT+ I W+ R+ V
Sbjct: 535 WISIGHSTQWLWYSVYATKQISWRTRALV 563
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 277 LYRSASISVLSMSSTPSADKTSLRESKRM 363
+Y+SA++ V + SS P+ADK + + ++M
Sbjct: 410 VYKSANLQVSNSSSIPAADKQTRQTMRQM 438
>02_02_0353 + 9276316-9276518,9276915-9277314
Length = 200
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +3
Query: 138 RHCRHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSRC 248
RH R +R+WC S P R+ R R+RC
Sbjct: 161 RHRRRRRRWCPSSSPRRSPAPPPGRACKGRRGGRTRC 197
>01_06_1794 - 39919363-39920025
Length = 220
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 348 RVKENERLLKEAKAAGKTVNLKRQPAPP 431
R ++ ++ EA AAG + KRQP PP
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPP 54
>07_03_1182 -
24610862-24611637,24612223-24612340,24612441-24614120,
24614253-24614320,24615370-24615550
Length = 940
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 186 TQSIPWKDRSRVQRYCSRSRC-DCNKRVRGRIIPKRINIRVEHVKHSKCRQDF 341
T+S PW+ + ++ S+C D R R + I R ++ +C +DF
Sbjct: 382 TESAPWRQQEKIATSSKASQCRDAEVRPRTASLYAYIERRGGGLEFLECNKDF 434
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +3
Query: 300 RVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVELRNPSYLR 479
R+ + + RQ +L N+ L KE G+T N + + + KA + RNPS R
Sbjct: 389 RIRNACFEQARQAYLIG---NKALAKELSMKGQTYNTQMKASHEKAREAIYRQRNPSSQR 445
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 82 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 246
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>05_03_0549 -
15349259-15349346,15349466-15349585,15349899-15350020,
15350511-15350783,15351398-15351502,15351588-15351804,
15352031-15352281,15352582-15352776,15352881-15353139,
15354617-15354714
Length = 575
Score = 27.1 bits (57), Expect = 9.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Frame = +3
Query: 135 WRHCRHQRQWCSSKGYATQSIPWKDRSRV 221
W H H QW YA++ W+ R V
Sbjct: 530 WIHVGHSTQWLWYSVYASKQFSWRTRMLV 558
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 303 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVELR 461
++ + K +++ K+ KE + LKE KAA + + LK P A ELR
Sbjct: 541 IKEEEKKKEKEEKAKQEKEEKAKLKEPKAAEEDLALKEMTGP--TAREEEELR 591
>01_06_0846 +
32408333-32408484,32408560-32408926,32409021-32409301,
32409877-32409931,32410137-32410331,32410417-32410569
Length = 400
Score = 27.1 bits (57), Expect = 9.9
Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Frame = +3
Query: 30 DELQGLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCR-----HQRQWCSSKGYATQS 194
D+ Q PP R+ P + YS HV+ ++ R R +R+ + Q
Sbjct: 239 DQAQATPPPDTRATRAVPPDHFTYSQDHVNPDIRGRRFFRCPNYDRERKAAYERQCREQQ 298
Query: 195 IPWKDRS-RVQRYCSRSRCDCNKR 263
W+ + + + +R RC C R
Sbjct: 299 CDWRVLTMALPPWEARLRCKCGDR 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,180,731
Number of Sequences: 37544
Number of extensions: 315917
Number of successful extensions: 1133
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1133
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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