Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0311.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                      129   2e-30
SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)                      29   1.9  
SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_11133| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)               28   4.4  
SB_11958| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score =  129 bits (311), Expect = 2e-30
 Identities = 57/76 (75%), Positives = 66/76 (86%)
 Frame = +1

Query: 28  MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
           MTN+KGYRRGTR +F+++FR  G   LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482

Query: 208 TGRVYNVTAHALGVIV 255
           TGRVYNVT  ALGV+V
Sbjct: 483 TGRVYNVTKRALGVVV 498


>SB_46448| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
 Frame = +3

Query: 3   KLCNTRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRH-CRHQRQW----C 167
           ++   + +D+  +GL   H  L   Q  H W  +A  V    Q  +     Q+ +    C
Sbjct: 265 RIIQVQTKDNIPEGLTWSHGMLPEEQKTHMWTTTARSVTTKTQDGKQDTTEQKSYKDSCC 324

Query: 168 SSKGYATQSIPWKDRSRV--QRYCSRSRCDCNKRVRGRIIPKRINIR 302
           + K + TQS P  +   +   +Y SR+R + N +    +IP++  ++
Sbjct: 325 NPKAFLTQSPPMTEEEWLPFAKYLSRTRINVNGK---HLIPRKCFVK 368


>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
          Length = 271

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = +3

Query: 285 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 401
           +RI   ++H ++  K +QDF+  +KE  RL +E+++   T
Sbjct: 39  ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78


>SB_43850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 411 KRQPAPPKAATSSVELRNPSYLRLSHTNS 497
           KR+  PPK  TS   LRNP+Y  L   NS
Sbjct: 576 KRENFPPKRKTSGA-LRNPAYRELMQGNS 603


>SB_53681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 42  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 164
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 42  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 164
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_23750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 42  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 164
           G+   H G+ R+    TWNYS +  + S  +W +    R +
Sbjct: 129 GMTLYHSGMTRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 169



 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 42  GLPPRHQGLVRSQVPHTWNYSALHVHESVQSWRHCRHQRQW 164
           G+   + G++R+    TWNYS +  + S  +W +    R +
Sbjct: 87  GMTWNYSGMIRNYPGMTWNYSGMTRNYSGMTWNYSGMTRNY 127


>SB_11133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 234 SRSRCDCNKRVRGRIIPKRINIRVEHVKHSKCRQDFL 344
           SR RC C  +   R +P R N R+++ +++    DF+
Sbjct: 3   SRGRCACGFKSPQRPLPSRYNRRIKNARYNNRCPDFV 39


>SB_8760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 874

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +3

Query: 12  NTRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHESV--QSWRHC 146
           NTR E+ EL  L PR QGL +      W    L +H +    S R+C
Sbjct: 472 NTRGEERELCLLLPRRQGLQQIPTLELWEKRNLKIHRNSLRSSARNC 518


>SB_57637| Best HMM Match : SRP40_C (HMM E-Value=2.3e-08)
          Length = 654

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 389 SLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDAL--RYNPSADTLVTITPRA*AVTLYT 216
           S+ F +   I  D+LK  L +  +     TD++ +  +YN +  TL+    +    T+  
Sbjct: 227 SVSFRKIKSINIDTLKNDLRSSELHHSPKTDLNGIVKKYNQTLSTLLDSHAQVKIKTITN 286

Query: 215 RPVFPWY 195
           RP  PW+
Sbjct: 287 RPRLPWF 293


>SB_11958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 237 VSSNVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFH 118
           VS NV   +CLS    +W  ++   IA  VY + N V F+
Sbjct: 44  VSENVYTYSCLSSSEKLWQKIVFSFIALIVYFIPNAVMFY 83


>SB_49207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +3

Query: 279 IPKRINIRVEHVKHSKCRQDFLKRVKENERLL----KEAKAAGKTVNLKRQPAPPKAATS 446
           I +++N +   ++  +   +  KRV++N+RL     ++AK   K  +  R P  PK   S
Sbjct: 170 IERKLNNKAREMESIRFNIENPKRVRDNKRLAQGGHEKAKVVNKRTDGPRLPELPKRKLS 229

Query: 447 SVEL 458
             +L
Sbjct: 230 GADL 233


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 SMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLP 441
           ++S+ PS  KT+   ++R     RKP +PAR ST       ++ P
Sbjct: 633 TLSAPPSRPKTAPTSAQRTPEPIRKPLVPARMSTDSTDAFKIQAP 677


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,349,113
Number of Sequences: 59808
Number of extensions: 366864
Number of successful extensions: 1160
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)