Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0311.Seq
         (548 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    27   0.41 
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           27   0.54 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    26   0.71 
AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          24   3.8  
AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    23   5.0  
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     23   6.6  
AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    23   8.8  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   8.8  

>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 27.1 bits (57), Expect = 0.41
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 180 YATQSIPWKDRSRVQRYCSRSR 245
           YA + +PW+DR+ +  Y +R R
Sbjct: 928 YALRLLPWQDRNNLPPYAARCR 949


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 330  RQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPP 431
            R++  +R +E  +L  EA  A +  N + QP PP
Sbjct: 1101 REEDERRTEERRQLHNEANRAYRQRNRRSQPTPP 1134


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 26.2 bits (55), Expect = 0.71
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 375 KEAKAAGKTVNLKRQPAPPKAATSSVELRNP 467
           K++KAAG   + K++ AP + ATS   +  P
Sbjct: 538 KDSKAAGMEKSRKKRGAPKRKATSPPAVATP 568


>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 315 KHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKR 416
           KH  C  +     +E +++ KEA    +T+NL +
Sbjct: 323 KHRLCELNREPTEREEQQMQKEAAVMARTMNLNQ 356


>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 170 TAPLPLMSTMSPTLYTFMYVE 108
           TA +P  S + PTL+  MY E
Sbjct: 607 TAGVPQGSVLGPTLWNLMYNE 627


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 6.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 230 VTLYTRPVFPWYTLCGIP 177
           V ++ RP  PW+++ GIP
Sbjct: 73  VGIFGRPGRPWWSVPGIP 90


>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 265 SAEGLYRSASISVLSMSSTPSAD 333
           SA  L RSA  + +  S+ PSAD
Sbjct: 178 SASQLKRSAEAAAIIASTAPSAD 200


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 8.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 81  VPHTWNYSALHVHESVQS 134
           V +TWNY+A  V + V S
Sbjct: 282 VENTWNYTAADVADLVDS 299


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 574,602
Number of Sequences: 2352
Number of extensions: 12076
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 50881347
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)