Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0311.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   111   4e-25
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.10 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.10 
AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical ...    29   1.7  
AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    27   6.7  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   6.7  
AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical ...    27   8.9  
AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical...    27   8.9  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  111 bits (266), Expect = 4e-25
 Identities = 51/76 (67%), Positives = 59/76 (77%)
 Frame = +1

Query: 28  MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 208 TGRVYNVTAHALGVIV 255
           TGR++NVT  A+G+IV
Sbjct: 61  TGRIFNVTRGAVGIIV 76



 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 43/76 (56%), Positives = 52/76 (68%), Gaps = 2/76 (2%)
 Frame = +3

Query: 255 NKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV-NLKRQPAPP 431
           NKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK+AG+ V  LKR P  P
Sbjct: 77  NKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAP 136

Query: 432 KAA-TSSVELRNPSYL 476
           + A T + +   P  L
Sbjct: 137 RGAHTVTTQNNEPELL 152


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 212 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 75
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 212 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 75
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -1

Query: 212 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 75
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>AL032625-4|CAB63350.2|  792|Caenorhabditis elegans Hypothetical
           protein Y37H9A.3 protein.
          Length = 792

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +3

Query: 339 FLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVELR 461
           +L  +K  +++++ A+A G  V++K  P PP+A T+S  L+
Sbjct: 494 YLVEMKGFDKMIQAAQA-GLPVSIKATPIPPQAQTASTTLQ 533


>AC017117-2|AAF16617.1|  295|Caenorhabditis elegans Hypothetical
           protein F43C11.7 protein.
          Length = 295

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 337 SCLHLECLTCSTRILMRFGIILPRTRLLQSHRERE 233
           +C H  C  CS++++  F I+ P  R     RE E
Sbjct: 26  TCGHSICKACSSKLVSNFKILCPFCRKTTELRENE 60


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 365 LILFDSLKEVLSALGVL 315
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -1

Query: 365 LILFDSLKEVLSALGVL 315
           LILFD+LK VL ++GVL
Sbjct: 200 LILFDALKNVLQSVGVL 216


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 3/112 (2%)
 Frame = +3

Query: 111 HVHESVQSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSRCDCNKRVRGRIIPK- 287
           H H+S +S +  R  + W SS+         + RSR     SRSR    +R R R   K 
Sbjct: 53  HRHKSKKSKKVRRRSKTWSSSRS--------RSRSR-----SRSRGRSQERRRSRKSRKS 99

Query: 288 RINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAA--GKTVNLKRQPAPPKA 437
           R   R++H +  K  +  L++  +NE L+ +A +   GK    K  P   +A
Sbjct: 100 RSRSRLKH-REEKIEKKNLEKAPKNE-LIPQAPSTENGKPKEFKEPPRKDEA 149


>AF101318-7|AAC69345.1|  826|Caenorhabditis elegans Hypothetical
           protein Y73C8C.3 protein.
          Length = 826

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 279 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVEL 458
           +PK + I +E +K  K   + + +V+EN+    E K A    + K+QP+    A +  + 
Sbjct: 498 VPKPVKILIETMKVEKIVLETVIKVEENQ----EPKLAKPKKSKKQQPSEKPIAKTEEKQ 553

Query: 459 RN--PSYLRLSHTN 494
            N  P   R S  N
Sbjct: 554 SNACPKCFRASEYN 567


>AC006769-14|AAF60579.1|  378|Caenorhabditis elegans Hypothetical
           protein Y45G12C.1 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -1

Query: 323 GVLDMLNT-DIDALRYNPSADTLVTITPRA*AVTLYTRPVFPWYTLCGI 180
           G+LD   T DID L+ N  +  L  +     A T +T  +  W+TLC +
Sbjct: 272 GLLDYFPTFDIDDLKSNEKSLQLSAMLVYL-ARTQFTLDILKWHTLCAL 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,385,499
Number of Sequences: 27780
Number of extensions: 255431
Number of successful extensions: 908
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)