Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0311.Seq
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    24   1.2  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    24   1.2  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    24   1.2  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    24   1.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   1.5  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   6.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.2  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.2  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.2  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   8.2  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 147 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 245
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 147 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 245
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 147 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 245
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +3

Query: 147 RHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSR 245
           R Q+ + +   Y      WK+RSR +    RSR
Sbjct: 45  REQKSYKNENSYRKYRETWKERSRDRTERERSR 77


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/52 (17%), Positives = 19/52 (36%)
 Frame = -3

Query: 219 HATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMCAEPASEQV 64
           H   L  V      +  CT+  + +     +  H++   +SS+   P    +
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHIKTHSDSSVVGSPRDSPI 296


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 342 LKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVELRNP 467
           LKR       +   +A+ ++ N    PA   A+T+++  R+P
Sbjct: 721 LKRTDIIHNYIMRGEASPRSPNASPSPAEQCASTTTITARSP 762


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 246 CDCNKRVRGRIIPKRINIRVEHVKHSKCRQD--FLKRVKENERLLKE 380
           C+  KRV   +   R +  + H +HSK  Q    +++++E ER  +E
Sbjct: 35  CNICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEMEQMREREREQRE 81


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 153 DVYNVSNFVHFHVRGERNSSMCAEPASEQVPGAAAVT 43
           ++YN S+ +  ++RGE  S+       + VP    +T
Sbjct: 376 NIYNASSRMENNLRGETQSNYREMEKRQSVPANDLLT 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 156 RQWCSSKGYATQSIPWKDRSRV 221
           R  C   GY  +SI W+  +RV
Sbjct: 509 RVTCPVAGYPIESIVWERDTRV 530


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 369 LLKEAKAAGKTVNLKRQPAPPKAATSSVELRNPSYLRLSHT 491
           L+++    G   N+K Q  P      S  LR+P +  +  T
Sbjct: 383 LVRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKT 423


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 369 LLKEAKAAGKTVNLKRQPAPPKAATSSVELRNPSYLRLSHT 491
           L+++    G   N+K Q  P      S  LR+P +  +  T
Sbjct: 383 LVRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKT 423


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 408 LKRQPAPPKAATSSVELRNPS 470
           ++ QP+P   +TSS  L+ PS
Sbjct: 434 IQSQPSPQYPSTSSHILQQPS 454


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +3

Query: 369 LLKEAKAAGKTVNLKRQPAPPKAATSSVELRNPSYLRLSHT 491
           L+++    G   N+K Q  P      S  LR+P +  +  T
Sbjct: 9   LVRKVLGFGYESNVKYQVVPSALQMWSTSLRDPVFFSIYKT 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,130
Number of Sequences: 438
Number of extensions: 3008
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)