Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0311.Seq
(548 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 108 2e-24
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 108 2e-24
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 107 6e-24
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 107 6e-24
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 35 0.041
At1g18620.1 68414.m02321 expressed protein 32 0.22
At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transfera... 31 0.51
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 30 0.89
At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transfera... 29 2.0
At4g33560.1 68417.m04769 expressed protein 29 2.0
At4g24350.1 68417.m03494 phosphorylase family protein contains P... 29 2.0
At5g41220.1 68418.m05009 glutathione S-transferase, putative sim... 27 6.2
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 6.2
At3g02150.2 68416.m00185 TCP family transcription factor, putati... 27 6.2
At3g02150.1 68416.m00184 TCP family transcription factor, putati... 27 6.2
At1g54926.1 68414.m06272 hypothetical protein 27 6.2
At1g04680.1 68414.m00465 pectate lyase family protein similar to... 27 6.2
At5g41240.1 68418.m05011 glutathione S-transferase, putative sim... 27 8.3
At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transfera... 27 8.3
At3g45880.1 68416.m04965 hypothetical protein 27 8.3
At3g13190.2 68416.m01651 myosin heavy chain-related contains wea... 27 8.3
At3g13190.1 68416.m01650 myosin heavy chain-related contains wea... 27 8.3
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 27 8.3
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 108 bits (260), Expect = 2e-24
Identities = 53/111 (47%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 208 TGRVYNVTAHALGVIVTSVSAEGLYRS-ASISVLSMSSTPSADKTSLRESK 357
TGR++NVT A+GV V + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 70.1 bits (164), Expect = 9e-13
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +3
Query: 249 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 428
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 429 PK 434
PK
Sbjct: 135 PK 136
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 108 bits (260), Expect = 2e-24
Identities = 53/111 (47%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 208 TGRVYNVTAHALGVIVTSVSAEGLYRS-ASISVLSMSSTPSADKTSLRESK 357
TGR++NVT A+GV V + R + V + + A++ LR+ K
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKK 111
Score = 70.1 bits (164), Expect = 9e-13
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +3
Query: 249 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 428
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKG 134
Query: 429 PK 434
PK
Sbjct: 135 PK 136
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 107 bits (256), Expect = 6e-24
Identities = 52/111 (46%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 208 TGRVYNVTAHALGVIVTSVSAEGLYRS-ASISVLSMSSTPSADKTSLRESK 357
TGR++NVT A+GV V + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 70.9 bits (166), Expect = 5e-13
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +3
Query: 249 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 428
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 429 PK 434
PK
Sbjct: 135 PK 136
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 107 bits (256), Expect = 6e-24
Identities = 52/111 (46%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Frame = +1
Query: 28 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 207
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 208 TGRVYNVTAHALGVIVTSVSAEGLYRS-ASISVLSMSSTPSADKTSLRESK 357
TGR++NVT A+GV V + R + V + + A++ LR+ +
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQ 111
Score = 70.9 bits (166), Expect = 5e-13
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +3
Query: 249 DCNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAP 428
+ NK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AKA G+T++ KRQP
Sbjct: 75 EVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKG 134
Query: 429 PK 434
PK
Sbjct: 135 PK 136
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 34.7 bits (76), Expect = 0.041
Identities = 21/65 (32%), Positives = 29/65 (44%)
Frame = +1
Query: 178 GMPHKVYHGKTGRVYNVTAHALGVIVTSVSAEGLYRSASISVLSMSSTPSADKTSLRESK 357
G P K Y+G GR+ AHAL + + L+R L+ P AD+ S + S
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWK--PCADQRSWKPSD 239
Query: 358 RMRGY 372
GY
Sbjct: 240 GKNGY 244
>At1g18620.1 68414.m02321 expressed protein
Length = 978
Score = 32.3 bits (70), Expect = 0.22
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +3
Query: 135 WRHCRHQRQWCSSKGYATQSIPWKDRSRVQRYCSRSRCDCNKRVRGRIIPKRINIRVEHV 314
WR + SS Y + PWK R R+ + C K + + K ++ V+H
Sbjct: 346 WRSSEFVMKPLSSLRYPIEPAPWKQTER-NRFSQKQACRSVKSLSQSMEGKLKDLEVKHS 404
Query: 315 -KHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATS---SVELRNP 467
K + +D L+ ++ + + +R +ATS S++LRNP
Sbjct: 405 GKDLRALKDILEAMQSKGLFDTRKQQQCSNLEAQRDYELADSATSKHDSIDLRNP 459
>At5g05900.1 68418.m00651 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 450
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/56 (33%), Positives = 25/56 (44%)
Frame = -3
Query: 267 GHACYNHTESVSSNVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERN 100
G +N S +V + + FVW LLN SDV+ V +H R ERN
Sbjct: 344 GFLTHNGWNSTVESVFEGVPMICMPFVWDQLLNARFVSDVWMVG--LHLEGRIERN 397
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 30.3 bits (65), Expect = 0.89
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +3
Query: 288 RINIRVEHVKHSKCRQDFLKRVKENER---LLKEAKAAGKTVNLKRQPAPPKAATSSVEL 458
+ ++++EHV S RQ+F + +K NE+ LL + + +T+ +++S+ L
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKVRALLNDLRYVPETI----------VSSNSIVL 969
Query: 459 RNPSYLRLSHTNS*RKVNKIF 521
+N L TN K N +F
Sbjct: 970 QNQDTFVLRITNKCVKENAVF 990
>At5g05890.1 68418.m00649 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 29.1 bits (62), Expect = 2.0
Identities = 22/82 (26%), Positives = 33/82 (40%)
Frame = -3
Query: 267 GHACYNHTESVSSNVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSSMC 88
G +N S +V A + + F W +LN SDV+ V ++ R ERN
Sbjct: 349 GFLTHNGWSSTVESVCEAVPMICLPFRWDQMLNARFVSDVWMVG--INLEDRVERNEIEG 406
Query: 87 AEPASEQVPGAAAVTLGVRHLR 22
A P A+ + HL+
Sbjct: 407 AIRRLLVEPEGEAIRERIEHLK 428
>At4g33560.1 68417.m04769 expressed protein
Length = 95
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 366 RLL-KEAKAAGKTVNLKRQPAPPKAATSSVELRN 464
RLL KEA A +T+ + +P+PP +++S+ +R+
Sbjct: 34 RLLHKEAMARVRTITVPSRPSPPTSSSSATSIRS 67
>At4g24350.1 68417.m03494 phosphorylase family protein contains Pfam
PF01048: Phosphorylase family
Length = 336
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -3
Query: 153 DVYNVSNFVHFHVRGERNSSM 91
DV+NV VHF + G N+SM
Sbjct: 114 DVFNVKGIVHFGIAGNMNNSM 134
>At5g41220.1 68418.m05009 glutathione S-transferase, putative
similar to emb|CAA10662
Length = 590
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 87 HTWNYSALHVHESVQSWRHCRHQRQWCS 170
+T NY + E +WR RH ++WCS
Sbjct: 370 YTNNYKSNFTLE--HAWRELRHSKKWCS 395
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 294 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 407
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At3g02150.2 68416.m00185 TCP family transcription factor, putative
similar to transcription factor PCF6 [Oryza sativa
(japonica cultivar-group)] GI:20975255; contains Pfam
profile PF03634: TCP family transcription factor
Length = 355
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 345 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSS-VELRNPSYLRLS 485
+ VKE++ + +GKTV +K+QP +++SS ++ ++P +R+S
Sbjct: 23 REVKEDQEETEVRATSGKTV-IKKQPTSISSSSSSWMKSKDPRIVRVS 69
>At3g02150.1 68416.m00184 TCP family transcription factor, putative
similar to transcription factor PCF6 [Oryza sativa
(japonica cultivar-group)] GI:20975255; contains Pfam
profile PF03634: TCP family transcription factor
Length = 278
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Frame = +3
Query: 345 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSS-VELRNPSYLRLS 485
+ VKE++ + +GKTV +K+QP +++SS ++ ++P +R+S
Sbjct: 23 REVKEDQEETEVRATSGKTV-IKKQPTSISSSSSSWMKSKDPRIVRVS 69
>At1g54926.1 68414.m06272 hypothetical protein
Length = 273
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 234 SRSRCDCNKRVRGRIIPKRINIRVEHVKHSK 326
+++ CD ++ + R+ PK +I +H KH K
Sbjct: 55 AKNGCDLSEGCKNRMTPKAFHIISQHPKHHK 85
>At1g04680.1 68414.m00465 pectate lyase family protein similar to
pectate lyase GP:14531296 from [Fragaria x ananassa]
Length = 431
Score = 27.5 bits (58), Expect = 6.2
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 204 SMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNS-SMCAEPASEQVPGAAAVTLGVRH 28
S +F W T+ +D +S F HV + NS S CA+ + V G+ A+T+ H
Sbjct: 216 SETHFGWRTM------ADGDAISIFGSSHVWIDHNSLSHCADGLVDAVMGSTAITISNNH 269
Query: 27 L 25
L
Sbjct: 270 L 270
>At5g41240.1 68418.m05011 glutathione S-transferase, putative
similar to glutathione S-transferase, GST 10b
GB:CAA10662 [Arabidopsis thaliana] 37349.
Length = 591
Score = 27.1 bits (57), Expect = 8.3
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 132 SWRHCRHQRQWCSS 173
+WR RH ++WCS+
Sbjct: 385 AWRELRHNKKWCST 398
>At5g05880.1 68418.m00647 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 451
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -3
Query: 267 GHACYNHTESVSSNVVHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERN 100
G +N S +V + + F W LLN SDV+ V +H R ER+
Sbjct: 345 GFLTHNGWNSTVESVCEGVPMICLPFRWDQLLNARFVSDVWMVG--IHLEGRIERD 398
>At3g45880.1 68416.m04965 hypothetical protein
Length = 431
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/55 (32%), Positives = 24/55 (43%)
Frame = -1
Query: 422 WLSLQVDGLAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSADTL 258
W +Q D FLQ L SL VLS D ++D + ++ PSA L
Sbjct: 299 WYDMQFDIKYAYFNFLQSLLYKSSSLNPVLSWREDEDSESSDAEGSKFTPSATNL 353
>At3g13190.2 68416.m01651 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 327 CRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVELR 461
CR + LK ++ +ER +++ KAA + K + A VEL+
Sbjct: 232 CRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELK 276
>At3g13190.1 68416.m01650 myosin heavy chain-related contains weak
similarity to Myosin II heavy chain, non muscle
(Swiss-Prot:P05659) [Acanthamoeba castellanii]
Length = 316
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 327 CRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAATSSVELR 461
CR + LK ++ +ER +++ KAA + K + A VEL+
Sbjct: 232 CRDETLKTLEMSEREIEDIKAATQDALKKAEMAQEATIVVDVELK 276
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 127 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 246
Y+ G V + +G + G PHKV R+Y++ + ALG
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALG 158
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,732
Number of Sequences: 28952
Number of extensions: 239584
Number of successful extensions: 775
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -