Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0310.Seq
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 38 0.001
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.014
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 32 0.073
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 31 0.17
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.22
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 0.68
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 29 0.68
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 29 0.68
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 28 1.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 1.2
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 28 1.2
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.6
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 27 1.6
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.6
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 1.6
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 27 2.1
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac... 27 2.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 27 2.1
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 27 2.7
SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 26 3.6
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 3.6
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 26 3.6
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 3.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 4.8
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.8
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 4.8
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 26 4.8
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 4.8
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 4.8
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 4.8
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 6.3
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 25 6.3
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 25 6.3
SPAC607.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.3
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 6.3
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 6.3
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 25 6.3
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 25 6.3
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 8.3
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.3
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 25 8.3
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.3
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 25 8.3
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 25 8.3
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub... 25 8.3
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 8.3
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.9 bits (84), Expect = 0.001
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Frame = -2
Query: 255 ESGVTVEREKSESNKKSREFENKEAES---STYRDKNRSVNSGSERKSSGKDEEYSE-QN 88
E+ V +E +K S+ S E + E+ES S+ ++ V +E K G E S+ ++
Sbjct: 151 EAVVKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSES 210
Query: 87 SSNKSFNDGDASADYQTKSKKVEKNSAR 4
SS+ S GD+ + ++S+ ++ +
Sbjct: 211 SSDSSSESGDSDSSSDSESESSSEDEKK 238
Score = 34.3 bits (75), Expect = 0.014
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSER--KSSGKDEEYSEQNSSNKSFND 64
E SES S E E+ +ES + ++ S S E K+ K E SE +SS++S +
Sbjct: 90 ESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEE 149
Query: 63 GDASADYQTKSKKVEKNSA 7
+A + K + +S+
Sbjct: 150 EEAVVKIEEKKESSSDSSS 168
Score = 33.9 bits (74), Expect = 0.018
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNK-SFNDG 61
E SES +S E++ + S + + S +S SE SS +EE + K S ++
Sbjct: 81 EESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSES 140
Query: 60 DASADYQTKSKKVEK 16
+S++ + + + V K
Sbjct: 141 SSSSESEEEEEAVVK 155
Score = 31.5 bits (68), Expect = 0.096
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = -2
Query: 228 KSESNKKSREFENKEAESSTYRDK---NRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGD 58
+SES+ E + E+ESS+ + + S +S SE + K EE E +S + S ++ +
Sbjct: 88 ESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESE 147
Query: 57 ASADYQTKSKKVEKNSA 7
+ K ++ +++S+
Sbjct: 148 EEEEAVVKIEEKKESSS 164
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSS--GKDEEYSEQNSSNKSFND 64
E SES S E + E+E S SE SS ++EE + K +
Sbjct: 104 ESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESS 163
Query: 63 GDASADYQTKSKKVEKNSA 7
D+S++ + + E +S+
Sbjct: 164 SDSSSESSSSESESESSSS 182
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.3 bits (75), Expect = 0.014
Identities = 19/96 (19%), Positives = 46/96 (47%)
Frame = -2
Query: 288 IRNEDRQA*WLESGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKD 109
++ +D + ES SES E E++E+E + K + + SE S +
Sbjct: 30 LKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSE 89
Query: 108 EEYSEQNSSNKSFNDGDASADYQTKSKKVEKNSARD 1
EE ++ + +D ++ ++ +++S+ E++ + +
Sbjct: 90 EEEETESEEDSEVSD-ESESESESESESEEESESEE 124
Score = 31.9 bits (69), Expect = 0.073
Identities = 21/75 (28%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Frame = -2
Query: 228 KSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE-YSEQNS--SNKSFNDGD 58
+SES+++ E E E E + S +S S+ +SS ++EE SE++S S++S ++ +
Sbjct: 52 ESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESE 111
Query: 57 ASADYQTKSKKVEKN 13
+ ++ + +S+ E++
Sbjct: 112 SESESEEESESEEES 126
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 225 SESNKKSREFENKE-AESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSF 70
SES+++ E E++E +E S + S SE +S ++E + S SF
Sbjct: 85 SESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSF 137
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/58 (22%), Positives = 28/58 (48%)
Frame = -2
Query: 192 NKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVE 19
+ +AES ++NR +S +++ EE S + S S + + +++ +VE
Sbjct: 11 DSDAESVDSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVE 68
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 31.9 bits (69), Expect = 0.073
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -3
Query: 365 TGSDDSDKNRGKDTDDKYSETGTNKSSETKTGKRDGSRAASQSKGKNPN 219
+G++D++KN+ +D YS+ T+ +S K G D S SKG + N
Sbjct: 48 SGTNDNNKNK-EDLSKLYSDVTTSNTSHEKDGSEDISVLNVNSKGASLN 95
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = -2
Query: 240 VEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDG 61
+ER + NKKSR +E + R+K S +E+ S KD+ +N+ N +ND
Sbjct: 34 LERNNKQKNKKSRNQVRRE-KKKLLREKTNSGAKLAEKNSDDKDQ--LTENNDNL-YNDK 89
Query: 60 DASADYQTKSK 28
++ ++ +K
Sbjct: 90 KSNGNFYDTNK 100
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.22
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGD 58
E E ++++ + ++ E S + + +++ K +S + SSN S ND D
Sbjct: 127 ENEIADNDLEPEVYDILYEEESKLGESRDLIRRLKQKRFETKKNNFSVKESSNLSNNDSD 186
Query: 57 ASADYQT 37
AS D T
Sbjct: 187 ASLDEDT 193
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 28.7 bits (61), Expect = 0.68
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = -2
Query: 285 RNEDRQA*WLESGVTVEREK---SESNKKSREFENKEAESSTYRDKNRSVNSGSER--KS 121
R + + + ++GV R +E+ +K+ N + + D +V + SE+ K
Sbjct: 402 RQVEERLNFFDTGVAPTRNSIAMAEAYEKALSSVNIDGDEEVDIDVEETVETISEKPSKK 461
Query: 120 SGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEKN 13
KD++ ++ S K + DAS + + KSKK +K+
Sbjct: 462 EKKDKKEKKKEKSKKKRSADDASEEVK-KSKKKKKS 496
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 28.7 bits (61), Expect = 0.68
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -1
Query: 307 RQEPINHQKRRQASVMARERRHSRKGKIRIQQEK 206
++E IN KRR+ ++ RRHS+KG + ++E+
Sbjct: 398 KREEINSLKRREENI----RRHSKKGAVPYEKER 427
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 28.7 bits (61), Expect = 0.68
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Frame = -2
Query: 258 LESGVTVEREKSESNK---KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN 88
L S T + +E+N K++ + S DK+R+ S K S K++
Sbjct: 452 LSSKKTANSQATENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASL 511
Query: 87 SSNKSFNDGDASADYQ-TKSKKVEKNSA 7
S +DG++S + TK+ K +K A
Sbjct: 512 QSAGVASDGESSPETPLTKASKSKKAKA 539
>SPCC1919.03c |||AMP-activated protein kinase beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 298
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 353 DSDKNRGKDTDDKYSETGTNKSSETKTGKRDG-SRAASQSKGK 228
D G+ +DD E G N++S+ T G ++ SQ+ GK
Sbjct: 46 DDLNQEGEMSDDNQQEGGNNRTSQNGTSGSSGHTKRRSQTSGK 88
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -2
Query: 252 SGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKS 73
+ V RE+S +NK E + +DKN+ + E +S ++ S SN S
Sbjct: 1489 NSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDISGE-SNSRQNNAISRAGRSNGS 1547
Query: 72 FNDGDASAD 46
N G+ S D
Sbjct: 1548 -NRGNDSRD 1555
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 231 EKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN--SSNKSFNDGD 58
EK++S S E E AE+S DKN +E ++ DE+ Q+ +N N D
Sbjct: 175 EKTKS-PISNENEKSAAETSIKEDKNGDAAKKNEGSANQDDEKLHSQSLVGNNCEVNSED 233
Query: 57 ASADYQTK 34
+D +++
Sbjct: 234 EFSDLESE 241
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 349 VTKIEERILTINIPRQEPINHQKRRQASVMARERRHSRKGK 227
+T I ER+ ++ + +QE IN K+R + E+ H+ +G+
Sbjct: 278 LTSIRERLESLILEKQEEINFWKQR-CRALETEKIHNHQGQ 317
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = -2
Query: 255 ESGVTVEREKSESNKKSREFE-NKEAESSTYRDKNRSVNS-GSERKSSGKDEEYSEQNSS 82
+S T S+S+ S + N + +S S NS SE +S KDE+ S+ +
Sbjct: 298 DSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDK 357
Query: 81 NKSFNDGDASADYQTKSKKVEK 16
+ D + TKS + K
Sbjct: 358 SLKRKHEDDESSTSTKSSRTTK 379
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/77 (23%), Positives = 36/77 (46%)
Frame = -2
Query: 255 ESGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNK 76
ES + + S+ + KS + ++++ ESST +R+ + R +++ +
Sbjct: 342 ESTSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRTTKTPFTRVGDPSQWDFASPALRDN 401
Query: 75 SFNDGDASADYQTKSKK 25
SFN D DY T + +
Sbjct: 402 SFNFED---DYGTLANR 415
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -2
Query: 258 LESGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDE-EYSEQNSS 82
+E V +K+ S ++E +N +++ K + N E + KD + S
Sbjct: 66 VEKSVNYLLQKASSKAGAKEKQNTDSQ------KEKKQNKSKEALADAKDPLDESSNGIK 119
Query: 81 NKSFNDGDASADYQTKSKKVEKNSA 7
N S N D A +QT + KNS+
Sbjct: 120 NLSLNKNDEPA-FQTNGEVKMKNSS 143
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 1.6
Identities = 16/69 (23%), Positives = 34/69 (49%)
Frame = -2
Query: 285 RNEDRQA*WLESGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDE 106
+ ED++ + S +++ +S KK E + +E SST + S + + S+ KD+
Sbjct: 198 KEEDKE---IHSEENETKDEIKSEKKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQ 254
Query: 105 EYSEQNSSN 79
E+ ++
Sbjct: 255 PSEEEEKTS 263
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -2
Query: 237 EREKSESNKKSREFEN---KEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSF 70
+R++ K RE+ + K+ + Y D S S +K S + + Y+E+ + ++S+
Sbjct: 317 KRDRDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSYKKRSHRSDRYTERENPDRSY 375
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSE 94
ERE E+ ++ R ++ ++S RD+ R + +E + K++E E
Sbjct: 253 EREAREAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEERE 300
>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
complex subunit Spp27|Schizosaccharomyces pombe|chr
3|||Manual
Length = 233
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/41 (24%), Positives = 19/41 (46%)
Frame = -3
Query: 344 KNRGKDTDDKYSETGTNKSSETKTGKRDGSRAASQSKGKNP 222
K +GK + +E G + T+ K DG + + ++P
Sbjct: 72 KTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDP 112
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Frame = -2
Query: 240 VEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFN-D 64
+E EK E+N + N+E E+++ +S S + + E E+N+ N +
Sbjct: 437 LEDEKEENNTAAESLINQE-ETTSGEAVTKSTVESSANEEEAEPNEIIEENAVKSLLNQE 495
Query: 63 GDASADYQTKSKKVEKNSA 7
G A+ +++VEKN+A
Sbjct: 496 GPAT------NEEVEKNNA 508
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -2
Query: 210 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDA--SADYQT 37
+ E E +E E + V +GS+ K D+E S ++ + D + SA
Sbjct: 341 EEEEEEEQEEEQEEDEEDEEEVGAGSDIKGFDADKEASVARATINKYEDDEVIPSAVETD 400
Query: 36 KSKKVEKNSARD 1
+S+ V + S D
Sbjct: 401 RSETVTETSVGD 412
>SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 347
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 159 KNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEKNSAR 4
K N+GS + K +SE ++S N D SAD +T+ +E ++
Sbjct: 2 KGSHPNAGSLLEPLHKLNPFSENSTSGHRKNASDHSADGETRPIAIEMKDSK 53
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -2
Query: 231 EKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKS 73
E S+++ +FEN+E++ ++ + + K+ K E EQ S K+
Sbjct: 714 EASQNDVSEDDFENEESDDDKIFEQQTKIE--DDVKNENKTEPVEEQKSEEKN 764
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 3.6
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 258 LESGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 79
+E + +E++K KKS + + + ESS K + +KS K EE SE S
Sbjct: 445 VEMDIVIEKKK----KKSSKLKEADGESSKKEKKEK--KDKKHKKSKRKSEE-SEDGESP 497
Query: 78 KSFNDGDASAD 46
K S D
Sbjct: 498 KKKKKSKKSKD 508
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 207 SREFENKEAESSTYRDKN--RSVNSGSERKSSGKD 109
++EFENK + ++T +D R N G+ R S D
Sbjct: 520 TKEFENKFSNANTAKDDEPARQTNKGTTRISRSSD 554
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -2
Query: 240 VEREKSESNKKSREFEN----KEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSS 82
++RE E + SR+F N K ST K R++ +GS ++ K E SE S
Sbjct: 1209 IQREMLEEEQSSRDFVNRTKKKPRGKSTGTRKPRAI-AGSSSSTAVKKEASSESKPS 1264
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 195 ENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKS 31
+ K A S KNR S + + + S Q+S S GD++ D +KS
Sbjct: 34 KGKSALRSALEKKNRKSKSKPKVTITSDTPKVSSQHSPVSSAYTGDSTTDLDSKS 88
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE-YSEQNSS 82
ER S SN+K E+ ST+ + R+++ DE+ + EQ +S
Sbjct: 929 ERAHSYSNRKQASSESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQEQTTS 981
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/75 (21%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Frame = -2
Query: 228 KSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN---SSNKSFNDGD 58
KSE +K + N+E + + E D E E+N N S
Sbjct: 3 KSELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQNTSVESES 62
Query: 57 ASADYQTKSKKVEKN 13
D + + ++V+K+
Sbjct: 63 EELDNENEDERVQKS 77
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
Frame = -2
Query: 240 VEREKSESNKKSREFENKEAESST-----YRDKNRSVNSGSERKSSGKDEEYSEQNSSNK 76
VE+++S ++ S ++ + + ++ Y D + S +S E++S K E+Y + + S+K
Sbjct: 256 VEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKEKQS--KIEKYMKSDKSSK 313
Query: 75 SF 70
+F
Sbjct: 314 NF 315
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 177 SSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 37
SS +RS S S++ YSE+NSSN G S D T
Sbjct: 166 SSQQPPNDRSTLSSSQKAKRPLKRSYSEKNSSNAE-PSGSRSGDRGT 211
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 240 VEREKSESNKKSREFENKEA-ESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 64
V + K E ++ E A + ++++ +V E K KD++ SSNK+ +
Sbjct: 318 VHKSKEEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKKEGITSSNKNDDS 377
Query: 63 GD 58
G+
Sbjct: 378 GN 379
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/58 (20%), Positives = 29/58 (50%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 64
++++ KK +++ + ++ RS + S+ K DE+ E ++NK+ +D
Sbjct: 38 KKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELENANKTLSD 95
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 296 WFLSRNIYRQYPFLYFC 346
W S+ +YR+Y LYFC
Sbjct: 53 WENSKLVYRRYAGLYFC 69
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 6.3
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Frame = -2
Query: 258 LESGVTVEREKSESNKKSREFE----NKEAESSTYRDKNRSVNSGSERKSSGKDEE-YSE 94
++S +E ++ ES+ S E + + ++S D+N + + SE K DEE SE
Sbjct: 731 VDSKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSE 790
Query: 93 QNSSNKSFND 64
S F+D
Sbjct: 791 IAHSEDEFDD 800
>SPAC607.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 231
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/63 (20%), Positives = 27/63 (42%)
Frame = -2
Query: 198 FENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVE 19
F++ ++ + DK ++ +D E+N +K++ Q +S+K
Sbjct: 94 FKSGPSKIDEFTDKKEKKKIAKRKEKRERDWNEIEENFEDKTWEADTTGQFIQIESRKKR 153
Query: 18 KNS 10
KNS
Sbjct: 154 KNS 156
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 195 ENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDA 55
E++E E S + R + + +DEE S+ S F+DG+A
Sbjct: 373 EDEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADFSDGEA 419
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = -2
Query: 165 RDKNRSVNSGSERKSSGKDE-EYSEQNSSNKSFN---DGDASADYQTKSKKVE 19
R +RS N GS R +G+ YS S+ + N + DAS + + E
Sbjct: 162 RKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPSAE 214
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -2
Query: 243 TVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNK 76
T E E E +KS E + + + +R++ G++ SG D++YS + +N+
Sbjct: 39 TKENEGYEELEKSGEAGAERTKENPFREE-----PGADFDRSGSDQQYSAEAEANQ 89
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 234 REKSESNKKSREFE-NKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSS 82
R+K +S+ + + ++ + S+Y S S G++E+YS S
Sbjct: 88 RKKEQSDVRGGDTSYSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTSGGS 139
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/44 (22%), Positives = 21/44 (47%)
Frame = -2
Query: 132 ERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEKNSARD 1
E S ++ + + N++F+DG + +T ++EK D
Sbjct: 180 ENSSEQVSSSFNSRVAHNRNFSDGPIVTNLETDQPRIEKKLTID 223
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -2
Query: 186 EAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEKNS 10
+ ++ Y+D S S S + DEE E + N ++GD + + + E S
Sbjct: 226 DINNNEYKDDESSSGSESYERDEDVDEEEEEDDDENN--DEGDDEDENENDELRSENGS 282
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 8.3
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -2
Query: 240 VEREKSESNKKSREFENKE-AESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 64
+ R K + EF E +ESS + + S E EE +E+NS+ +
Sbjct: 659 INRPKFVGQQTLEEFYASETSESSEGEYETSTSESEDEETDDTSQEEDNEKNSTPDEDTE 718
Query: 63 GDASADYQTKS 31
+ ++ TKS
Sbjct: 719 NNNTSSISTKS 729
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -2
Query: 114 KDEEYSEQNSSNKSFNDGDASADYQTKSKKVEKNSARD 1
+D S SS K+F S KKVE+N A D
Sbjct: 595 RDTSMSAYMSSRKTFEINPKSPIIAELKKKVEENGAED 632
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 237 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNK 76
EREK ESN S + E+ + ++T S N+ S+ + ++ Y + S K
Sbjct: 45 EREKVESNPNSSDEEDLTSTNNT----RSSDNTTSDTEDDSGEDSYQVEWESGK 94
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 8.3
Identities = 19/86 (22%), Positives = 37/86 (43%)
Frame = -2
Query: 282 NEDRQA*WLESGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE 103
+EDR S +REK + + ++ + K + S K E+ + K +E
Sbjct: 149 DEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKK------LEKITKKKKKE 202
Query: 102 YSEQNSSNKSFNDGDASADYQTKSKK 25
+ +++ + S S+D + K KK
Sbjct: 203 HKKKDKESSSKKRKSGSSDKEEKKKK 228
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 213 KKSREFENK-EAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 37
++ E E+ ++E T +D++ SVN E+ K++ ++ +S ++ + +
Sbjct: 70 QRKEELESHVDSEIETSKDES-SVNKVEEKVEEFKEDNVEQEIKQKRSLSESPQESMLEK 128
Query: 36 KSKKVEKNSARD 1
SKK + + A +
Sbjct: 129 VSKKPKVSEAHN 140
>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 125
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -2
Query: 174 STYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVEKNSARD 1
S D N +++ S+ KD +S Q +SN + D +ADY K A+D
Sbjct: 31 SGQNDMNLTLDINSQIYPLEKDATFSLQITSNLNSPDLKEAADYIMYGKVYRVEEAKD 88
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = -3
Query: 350 SDKNRGKDTDDKYSETGTNKSSETKTGKRDGSRAASQS 237
SD + +D YS ++ +E +RD R+ +++
Sbjct: 2 SDSRQNSQREDNYSRDRRSRFTEDSYSRRDSQRSGNEA 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,226
Number of Sequences: 5004
Number of extensions: 27611
Number of successful extensions: 236
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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