Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0309.Seq
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5WIH2 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_UPI00004987E5 Cluster: GTP-binding protein; n=1; Entamo...    32   7.6  
UniRef50_A1AV63 Cluster: Riboflavin biosynthesis protein RibF; n...    32   7.6  

>UniRef50_Q5WIH2 Cluster: Putative uncharacterized protein; n=1;
           Bacillus clausii KSM-K16|Rep: Putative uncharacterized
           protein - Bacillus clausii (strain KSM-K16)
          Length = 273

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +2

Query: 269 LFTAINIPELPFVVKEKHRECKHNLLPRHNVYFLGYFIM 385
           LF  + +  LPF+ +  H E KH+  P H V  +G F++
Sbjct: 88  LFAGLVLGILPFLWRSAHAETKHSFKPLHYVLMIGAFVL 126


>UniRef50_UPI00004987E5 Cluster: GTP-binding protein; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: GTP-binding protein -
           Entamoeba histolytica HM-1:IMSS
          Length = 367

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 512 PSLDALVSILNNPLSISRLSRDPQYFCFSYLYSNFNSFR 396
           P   A V  L++P+ +S L+   +YFCF Y  S  N F+
Sbjct: 296 PKTKAGVIDLDHPIILSYLTSSVEYFCFKYNKSLLNDFK 334


>UniRef50_A1AV63 Cluster: Riboflavin biosynthesis protein RibF; n=2;
           sulfur-oxidizing symbionts|Rep: Riboflavin biosynthesis
           protein RibF - Ruthia magnifica subsp. Calyptogena
           magnifica
          Length = 300

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 488 ILNNPLSISRLSRDPQYFCFSYLYSNFNSFRLQHA**NNLGSTRYVAV 345
           I+N P  +   S  PQ+F F ++ +  +SF+ +HA   NLG   Y+ +
Sbjct: 43  IMNLPSVLISFSPTPQHF-FGHMQATLSSFKQKHALLTNLGLEEYLLI 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,650,314
Number of Sequences: 1657284
Number of extensions: 8627700
Number of successful extensions: 19886
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19884
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)