Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0309.Seq
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174...    27   7.5  

>01_06_1762 -
           39716723-39717016,39717256-39717332,39717452-39717498,
           39717953-39718053,39718271-39718360,39718556-39720133
          Length = 728

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 282 IAVNSYPQRPSPSAEHARGAVTLSHKGKRSF 190
           I ++ +PQ PSP A H+   VT S  G RS+
Sbjct: 437 IHISGHPQEPSPRAAHS-APVTPSSAGCRSW 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,439,073
Number of Sequences: 37544
Number of extensions: 223622
Number of successful extensions: 446
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)