Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0309.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)                       28   4.4  
SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)                    27   7.6  

>SB_30049| Best HMM Match : FBA_2 (HMM E-Value=7)
          Length = 282

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/33 (39%), Positives = 26/33 (78%), Gaps = 3/33 (9%)
 Frame = -1

Query: 95  ES*FISYNF-FFSRSIKVFDYIPSD--NKTTLK 6
           +S  +SYN+ FF+R+I++++ +PS+  N+ TL+
Sbjct: 228 QSNILSYNYSFFARAIRIWNLLPSNVVNQVTLE 260


>SB_25795| Best HMM Match : RVT_1 (HMM E-Value=0.29)
          Length = 384

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 328 FPVFFLDYEGQLWNVYCSKQLPSTT 254
           +P+  +D   Q+W+ YC K+LP  T
Sbjct: 112 YPIPVIDESYQIWHRYCWKRLPFGT 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,903,868
Number of Sequences: 59808
Number of extensions: 273442
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)