Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0309.Seq
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC139912-1|AAI39913.1|  360|Homo sapiens SEC14L4 protein protein.      30   4.6  
AY158085-1|AAO21869.1|  406|Homo sapiens SEC14p-like protein TAP...    30   4.6  
AC004832-4|AAF19259.1|  406|Homo sapiens WUGSC:H_DJ0539M06.4 pro...    30   4.6  

>BC139912-1|AAI39913.1|  360|Homo sapiens SEC14L4 protein protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 18  FIIRWNIIKNFDRPRKKKVVRYKLAFIRKSQQLITLVT 131
           F++RW   +NFD  + + ++R  + F RK Q L  +VT
Sbjct: 37  FLLRWLRARNFDLQKSEDMLRRHMEF-RKQQDLDNIVT 73


>AY158085-1|AAO21869.1|  406|Homo sapiens SEC14p-like protein TAP3
           protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 18  FIIRWNIIKNFDRPRKKKVVRYKLAFIRKSQQLITLVT 131
           F++RW   +NFD  + + ++R  + F RK Q L  +VT
Sbjct: 37  FLLRWLRARNFDLQKSEDMLRRHMEF-RKQQDLDNIVT 73


>AC004832-4|AAF19259.1|  406|Homo sapiens WUGSC:H_DJ0539M06.4
           protein.
          Length = 406

 Score = 30.3 bits (65), Expect = 4.6
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 18  FIIRWNIIKNFDRPRKKKVVRYKLAFIRKSQQLITLVT 131
           F++RW   +NFD  + + ++R  + F RK Q L  +VT
Sbjct: 37  FLLRWLRARNFDLQKSEDMLRRHMEF-RKQQDLDNIVT 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,569,357
Number of Sequences: 237096
Number of extensions: 1337802
Number of successful extensions: 2302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2302
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)