Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0309.Seq
         (548 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ165550-1|AAZ95162.1|  973|Drosophila melanogaster SNM protein.       29   3.1  
AE014296-251|AAF47494.2|  944|Drosophila melanogaster CG13916-PA...    29   3.1  
AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA...    29   4.1  

>DQ165550-1|AAZ95162.1|  973|Drosophila melanogaster SNM protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 545 GAEAEDRGQLSPSLDALVSILNNPLS-ISRLSRDPQYFCFSYLY 417
           GA+      L+P L  L+    N L  I RL   P+YFCF Y +
Sbjct: 470 GAQERATKCLAPVLPELLRTYANRLQVIERLLELPKYFCFDYYH 513


>AE014296-251|AAF47494.2|  944|Drosophila melanogaster CG13916-PA
           protein.
          Length = 944

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 545 GAEAEDRGQLSPSLDALVSILNNPLS-ISRLSRDPQYFCFSYLY 417
           GA+      L+P L  L+    N L  I RL   P+YFCF Y +
Sbjct: 441 GAQERATKCLAPVLPELLRTYANRLQDIERLLELPKYFCFDYYH 484


>AE014298-1753|AAF48147.2| 1860|Drosophila melanogaster CG2750-PA
            protein.
          Length = 1860

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 291  QSCPS*SRKNTGNVNTTCYRDITCTS 368
            + CP+  ++NT NV T C  D+T  S
Sbjct: 1280 RKCPTPPKRNTPNVTTECLNDMTMPS 1305


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,189,535
Number of Sequences: 53049
Number of extensions: 397721
Number of successful extensions: 872
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2089831299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)