Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0308.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p ... 110 2e-23
UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep: Zgc:5... 90 3e-17
UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4; n... 90 4e-17
UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12... 88 2e-16
UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma j... 67 3e-10
UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RA... 65 1e-09
UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole gen... 61 2e-08
UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome a... 59 7e-08
UniRef50_Q9FZK2 Cluster: F17L21.12; n=13; Magnoliophyta|Rep: F17... 56 5e-07
UniRef50_Q7RG55 Cluster: Arabidopsis thaliana F17L21.12-related;... 54 2e-06
UniRef50_A0D197 Cluster: Chromosome undetermined scaffold_34, wh... 54 2e-06
UniRef50_Q5CPN8 Cluster: Putative uncharacterized protein; n=1; ... 53 6e-06
UniRef50_A5KBT3 Cluster: Ribosome associated membrane protein RA... 52 8e-06
UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11; Liliopsida|... 51 2e-05
UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2; ... 51 2e-05
UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome a... 42 0.008
UniRef50_Q5ATU0 Cluster: Putative uncharacterized protein; n=1; ... 38 0.24
UniRef50_Q553P6 Cluster: Putative uncharacterized protein; n=1; ... 37 0.31
UniRef50_Q9HBV2 Cluster: Sperm acrosome membrane-associated prot... 33 5.1
UniRef50_UPI0000D56160 Cluster: PREDICTED: similar to CG17922-PA... 33 6.7
UniRef50_Q8YX06 Cluster: All1413 protein; n=3; Nostocaceae|Rep: ... 32 8.9
UniRef50_A6R365 Cluster: Predicted protein; n=1; Ajellomyces cap... 32 8.9
>UniRef50_Q8SYY6 Cluster: RE27904p; n=8; Coelomata|Rep: RE27904p -
Drosophila melanogaster (Fruit fly)
Length = 64
Score = 110 bits (265), Expect = 2e-23
Identities = 50/62 (80%), Positives = 56/62 (90%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 246
MAP QRMR+ANE ASK +TMRGNVPK++K KE QYPV PWLLALFIFVVCGSA+FQI+QS
Sbjct: 1 MAPPQRMRVANEKASKYVTMRGNVPKSSKTKEGQYPVGPWLLALFIFVVCGSAIFQIVQS 60
Query: 247 IR 252
IR
Sbjct: 61 IR 62
>UniRef50_Q7ZUJ1 Cluster: Zgc:56419; n=5; Euteleostomi|Rep:
Zgc:56419 - Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 66
Score = 90.2 bits (214), Expect = 3e-17
Identities = 43/64 (67%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTK-EKEDQYPVAPWLLALFIFVVCGSAVFQIIQ 243
M KQR+R+ANE SKNIT+RGNV K+T+ +E++ V PWLLALF+FVVCGSA+FQIIQ
Sbjct: 1 MVAKQRIRMANEKHSKNITLRGNVAKSTRGTQEEKAVVGPWLLALFVFVVCGSAIFQIIQ 60
Query: 244 SIRL 255
SIR+
Sbjct: 61 SIRM 64
>UniRef50_Q9Y6X1 Cluster: Ribosome-attached membrane protein 4;
n=33; Eumetazoa|Rep: Ribosome-attached membrane protein
4 - Homo sapiens (Human)
Length = 66
Score = 89.8 bits (213), Expect = 4e-17
Identities = 44/64 (68%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEK-EDQYPVAPWLLALFIFVVCGSAVFQIIQ 243
M KQR+R+ANE SKNIT RGNV KT++ E++ V PWLLALFIFVVCGSA+FQIIQ
Sbjct: 1 MVAKQRIRMANEKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQ 60
Query: 244 SIRL 255
SIR+
Sbjct: 61 SIRM 64
>UniRef50_Q8MXH3 Cluster: Putative uncharacterized protein T09A12.5;
n=2; Bilateria|Rep: Putative uncharacterized protein
T09A12.5 - Caenorhabditis elegans
Length = 63
Score = 87.8 bits (208), Expect = 2e-16
Identities = 37/63 (58%), Positives = 49/63 (77%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 246
MAPKQRM +AN SKN+T RGNVPK K E ++P + WL+ LFIFVVCGSA+F++I+
Sbjct: 1 MAPKQRMAVANAQFSKNVTQRGNVPKGNKTNESKFPTSQWLIGLFIFVVCGSAIFEVIRY 60
Query: 247 IRL 255
I++
Sbjct: 61 IKV 63
>UniRef50_Q5BTC1 Cluster: SJCHGC02042 protein; n=1; Schistosoma
japonicum|Rep: SJCHGC02042 protein - Schistosoma
japonicum (Blood fluke)
Length = 79
Score = 67.3 bits (157), Expect = 3e-10
Identities = 31/64 (48%), Positives = 43/64 (67%)
Frame = +1
Query: 64 KMAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQ 243
+M+ QRM++ N A N+ RGNVPK+ K + Q + +L L +FVVCGSAVF+IIQ
Sbjct: 14 RMSASQRMKVQNGKAHGNVVNRGNVPKSLKSSDSQSNMNACILGLIVFVVCGSAVFEIIQ 73
Query: 244 SIRL 255
IR+
Sbjct: 74 HIRM 77
>UniRef50_Q238X7 Cluster: Ribosome associated membrane protein RAMP4
containing protein; n=1; Tetrahymena thermophila
SB210|Rep: Ribosome associated membrane protein RAMP4
containing protein - Tetrahymena thermophila SB210
Length = 107
Score = 64.9 bits (151), Expect = 1e-09
Identities = 27/58 (46%), Positives = 43/58 (74%)
Frame = +1
Query: 76 KQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQSI 249
KQ+M++ + + +KN+T RG VP + K KE++ V PW+L +F+FVV GSA+FQI+ +
Sbjct: 48 KQQMKLKSNLHNKNVTNRGKVPSSLKSKEEK-SVGPWVLGIFLFVVVGSAIFQILNVV 104
>UniRef50_A7QP46 Cluster: Chromosome chr1 scaffold_136, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr1 scaffold_136, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 105
Score = 60.9 bits (141), Expect = 2e-08
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +1
Query: 112 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 246
KNIT RG+VP+TT +K YPV P LL F+FVV GS++FQII++
Sbjct: 54 KNITKRGSVPETTTKKGSDYPVGPVLLGFFVFVVIGSSLFQIIRT 98
>UniRef50_UPI0000E1FFEC Cluster: PREDICTED: similar to ribosome
attached membrane protein 4; n=1; Pan troglodytes|Rep:
PREDICTED: similar to ribosome attached membrane protein
4 - Pan troglodytes
Length = 231
Score = 59.3 bits (137), Expect = 7e-08
Identities = 26/39 (66%), Positives = 31/39 (79%)
Frame = +1
Query: 139 PKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQSIRL 255
P+ E++ V PWLLALFIFVVCGSA+FQIIQSIR+
Sbjct: 191 PRPRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRM 229
>UniRef50_Q9FZK2 Cluster: F17L21.12; n=13; Magnoliophyta|Rep:
F17L21.12 - Arabidopsis thaliana (Mouse-ear cress)
Length = 77
Score = 56.4 bits (130), Expect = 5e-07
Identities = 26/45 (57%), Positives = 33/45 (73%)
Frame = +1
Query: 112 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 246
KNI RG VP+TT +K YPV P LL F+FVV GS++FQII++
Sbjct: 26 KNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIRT 70
>UniRef50_Q7RG55 Cluster: Arabidopsis thaliana F17L21.12-related;
n=3; Plasmodium|Rep: Arabidopsis thaliana
F17L21.12-related - Plasmodium yoelii yoelii
Length = 67
Score = 54.4 bits (125), Expect = 2e-06
Identities = 28/66 (42%), Positives = 38/66 (57%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 246
MA +++ E NIT RGNVP + +K +Y V P LL +FIF+V GS V QI+
Sbjct: 1 MASNRKINKKIETFDNNITNRGNVPTSIAKKGKKYTVGPILLGIFIFIVIGSVVIQILNI 60
Query: 247 IRLLKS 264
+ KS
Sbjct: 61 LSKSKS 66
>UniRef50_A0D197 Cluster: Chromosome undetermined scaffold_34, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_34,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 75
Score = 54.4 bits (125), Expect = 2e-06
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +1
Query: 79 QRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 240
Q M++ ++ N+ +G VPK+ +KE+ PV P LL +F+FVV GSA+FQI+
Sbjct: 13 QTMKLRSQNYQGNVNKQGKVPKSLIKKEENLPVGPILLGVFLFVVVGSALFQIL 66
>UniRef50_Q5CPN8 Cluster: Putative uncharacterized protein; n=1;
Cryptosporidium parvum Iowa II|Rep: Putative
uncharacterized protein - Cryptosporidium parvum Iowa II
Length = 65
Score = 52.8 bits (121), Expect = 6e-06
Identities = 27/60 (45%), Positives = 39/60 (65%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 246
MA + ++ E+ KNI RG+V ++ +K+ YPV P+ L LFIFVV GSA+ Q+I S
Sbjct: 1 MAQSRFTKLKGELYEKNIDKRGSV--SSSKKKSGYPVGPFALGLFIFVVIGSAIIQMIVS 58
>UniRef50_A5KBT3 Cluster: Ribosome associated membrane protein
RAMP4, putative; n=3; Plasmodium|Rep: Ribosome
associated membrane protein RAMP4, putative - Plasmodium
vivax
Length = 102
Score = 52.4 bits (120), Expect = 8e-06
Identities = 26/67 (38%), Positives = 39/67 (58%)
Frame = +1
Query: 61 NKMAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQII 240
+KMA +++ NIT RGNVP + +K ++PV P LL +F+FVV GS Q++
Sbjct: 33 SKMASNRKISQKINAFDNNITHRGNVPASLVKKGKKHPVGPILLVIFVFVVIGSVFIQML 92
Query: 241 QSIRLLK 261
I+ K
Sbjct: 93 SMIQKSK 99
>UniRef50_Q0IRG8 Cluster: Os11g0637400 protein; n=11;
Liliopsida|Rep: Os11g0637400 protein - Oryza sativa
subsp. japonica (Rice)
Length = 573
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +1
Query: 112 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGS 222
KNIT RG+VP+TT +K + YPV P +L FIFVV GS
Sbjct: 27 KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGS 63
>UniRef50_A3CD52 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 460
Score = 51.2 bits (117), Expect = 2e-05
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = +1
Query: 112 KNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGS 222
KNIT RG+VP+TT +K + YPV P +L FIFVV GS
Sbjct: 17 KNITKRGSVPETTVKKGNDYPVGPLVLGFFIFVVIGS 53
>UniRef50_UPI0000D9E6A9 Cluster: PREDICTED: similar to ribosome
associated membrane protein 4; n=1; Macaca mulatta|Rep:
PREDICTED: similar to ribosome associated membrane
protein 4 - Macaca mulatta
Length = 177
Score = 42.3 bits (95), Expect = 0.008
Identities = 20/30 (66%), Positives = 23/30 (76%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKE 156
M KQR+R+ANE SKNIT RGNV KT K+
Sbjct: 1 MVAKQRIRMANEKHSKNITQRGNVAKTLKK 30
>UniRef50_Q5ATU0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 78
Score = 37.5 bits (83), Expect = 0.24
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYP-VAPWLLALFIFVVCGSAVFQIIQ 243
M + R ANE +K+ + PKTT K + P ++ + L FVVCG VF++++
Sbjct: 1 MTQTPQQRRANEKFAKHEASKRGKPKTTTTKHNTKPSLSTGWVVLLAFVVCGGLVFELLR 60
Query: 244 SIRLLKS 264
+ L S
Sbjct: 61 IVPQLWS 67
>UniRef50_Q553P6 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 59
Score = 37.1 bits (82), Expect = 0.31
Identities = 20/59 (33%), Positives = 34/59 (57%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQ 243
M+ + +R ++ +NI RG + K+KED + P++L IFVV GS + QI++
Sbjct: 1 MSQSRTLRQKSQKYQENIEKRGVA--SPKKKEDGLNINPYVLGFIIFVVVGSTLLQILK 57
>UniRef50_Q9HBV2 Cluster: Sperm acrosome membrane-associated protein
1 precursor; n=17; Theria|Rep: Sperm acrosome
membrane-associated protein 1 precursor - Homo sapiens
(Human)
Length = 294
Score = 33.1 bits (72), Expect = 5.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 126 EGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPINK 251
E +C + R P CG P S L SV L C+ +P+N+
Sbjct: 105 ESKCVVRVEECRGPTDCGWGKPISESLESVRLACIHTSPLNR 146
>UniRef50_UPI0000D56160 Cluster: PREDICTED: similar to CG17922-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG17922-PA - Tribolium castaneum
Length = 715
Score = 32.7 bits (71), Expect = 6.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 106 ASKNITMRGNVPKTTKEKEDQYPVAPWLLALFIFVVCGSAVFQIIQS 246
A+K T G PK T+E E + WL+ +F+F + + II +
Sbjct: 352 ATKTATSIGKNPKPTQEIEYMFMTVSWLMGVFVFALLIGQIRDIIST 398
>UniRef50_Q8YX06 Cluster: All1413 protein; n=3; Nostocaceae|Rep:
All1413 protein - Anabaena sp. (strain PCC 7120)
Length = 536
Score = 32.3 bits (70), Expect = 8.9
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -3
Query: 215 HTTKMKRARSQGA-TGYWSSFSLVVLGTFPLIVMFLLAISLAIRILCLGAILFCYKVYLS 39
H ++KR Q G W S +L++LG FP F +AI A +I A++ C Y++
Sbjct: 211 HLQEVKRRLFQFTQVGIWGSGNLIILGLFPYTRTFQVAIFTAAQIPLRLAVV-CAGTYVA 269
Query: 38 V 36
+
Sbjct: 270 I 270
>UniRef50_A6R365 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 80
Score = 32.3 bits (70), Expect = 8.9
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +1
Query: 67 MAPKQRMRIANEIASKNITMRGNVPKTTKEKEDQYPVAP----WLLALFIFVVCGSAVFQ 234
MA + R ANE +K + P+T + + Q P +P W++ L FVVCG +F+
Sbjct: 1 MAQTPQQRRANERFAKLEAAKRGKPETGVKSKKQKPKSPVPLGWVVVL-AFVVCGGMLFE 59
Query: 235 IIQSI 249
+ + +
Sbjct: 60 LARVV 64
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,667,021
Number of Sequences: 1657284
Number of extensions: 10938443
Number of successful extensions: 26070
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26061
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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