Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0308.Seq
(598 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292379-1|CAL23191.2| 376|Tribolium castaneum gustatory recept... 23 2.6
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.4
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.4
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 22 3.4
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 22 3.4
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.0
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 6.0
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 21 6.0
AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory recept... 21 7.9
AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein ... 21 7.9
>AM292379-1|CAL23191.2| 376|Tribolium castaneum gustatory receptor
candidate 58 protein.
Length = 376
Score = 22.6 bits (46), Expect = 2.6
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +1
Query: 211 VCGSAVFQIIQSIRLLKSRRQLENCYRKH 297
+ G V +I+ ++ S +++N Y KH
Sbjct: 243 ITGRFVIKILVALNFFTSTLEIDNLYLKH 271
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.4
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 161 SFSLVVLGTFPLIVMFLLAISLAIRILCL 75
S ++ +LGT+ +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.4
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 161 SFSLVVLGTFPLIVMFLLAISLAIRILCL 75
S ++ +LGT+ +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 22.2 bits (45), Expect = 3.4
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 161 SFSLVVLGTFPLIVMFLLAISLAIRILCL 75
S ++ +LGT+ +MF++A S+ + ++ L
Sbjct: 268 SDAIPLLGTYFNCIMFMVASSVVLTVVVL 296
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 22.2 bits (45), Expect = 3.4
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 470 PYVSASRFNPVSVKETSSHDC-TVKGTNGR 384
PYV+ S ++P S+ + C T K NG+
Sbjct: 854 PYVNGSEYHP-SIVSLGEYKCVTCKCENGK 882
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.0
Identities = 8/30 (26%), Positives = 21/30 (70%)
Frame = -3
Query: 164 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 75
+S ++ ++GT+ +MF++A S+ + ++ L
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVL 296
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.4 bits (43), Expect = 6.0
Identities = 8/30 (26%), Positives = 21/30 (70%)
Frame = -3
Query: 164 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 75
+S ++ ++GT+ +MF++A S+ + ++ L
Sbjct: 267 TSDAVPLIGTYFNCIMFMVASSVVLTVVVL 296
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 21.4 bits (43), Expect = 6.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 158 FSLVVLGTFPLIVMFLLAISLAIRILC 78
F L TF +V L+ SLAI +LC
Sbjct: 398 FRLSKTKTFCTLVTALVYCSLAIFVLC 424
>AM292344-1|CAL23156.1| 291|Tribolium castaneum gustatory receptor
candidate 23 protein.
Length = 291
Score = 21.0 bits (42), Expect = 7.9
Identities = 6/33 (18%), Positives = 17/33 (51%)
Frame = +1
Query: 184 WLLALFIFVVCGSAVFQIIQSIRLLKSRRQLEN 282
W+ L++ ++C + + Q + +L + + N
Sbjct: 206 WIFQLYLLILCDQILREFDQIVVILSKVKSILN 238
>AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein
protein.
Length = 370
Score = 21.0 bits (42), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 97 NEIASKNITMRGNVPKTTKEKED 165
N ++S N +RG KT K +ED
Sbjct: 92 NVVSSTNQEIRGPKRKTWKVEED 114
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,504
Number of Sequences: 336
Number of extensions: 2956
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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