Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0308.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    29   0.68 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.6  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   3.6  
SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr 1...    25   6.3  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.4  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    25   8.4  

>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 28.7 bits (61), Expect = 0.68
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 93  RQRDRQ*KHHNEGECTQNYQGKRRPISCGTLAPCSLHLRSVWLCCVPDNPINKTA 257
           + + RQ K + E       + ++R I C  L PC   ++S   C  P++PI + A
Sbjct: 2   QMKPRQDKKNQEIFRISCQRCRQRKIKCDRLHPCFQCVKSNSQCFYPEDPIRRRA 56


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 185 QGATGYWSSFSLVVLGTFPLIVMFLLA 105
           Q  TG W+   +V+   F ++V+FLLA
Sbjct: 146 QNVTGNWTWAHVVICYVFNVLVLFLLA 172


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 237 YLEH-SRATHYEDEESKEP 184
           Y EH +  +HYE+EE +EP
Sbjct: 782 YFEHETEPSHYEEEEEEEP 800


>SPAC4G9.14 |||Mvp17/PMP22 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 199 FIFVVCGSAVFQIIQSIRLLKSRRQLENCYRKH 297
           FIF   G   F +   I   KS  +L++ +RKH
Sbjct: 135 FIFAPLGIVFFFLFMGITECKSYERLKSYFRKH 167


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 564  EFVA*VVFKNYIEKEXKIHEN 502
            E++A +VFK  +EKE +  EN
Sbjct: 1104 EYLAEIVFKTLVEKEREWREN 1124


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 316 IVLLFYCVFDSSSPVVFVI*AVLLIGLSGTQQSHTLRR 203
           +V L++ +F+ ++ V F++ A   +G      S+ LRR
Sbjct: 469 MVTLYFIIFNIAAFVTFIVFAYTAVGSREVIDSYDLRR 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,385,734
Number of Sequences: 5004
Number of extensions: 47673
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)