Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0308.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   3.0  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   3.0  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   3.0  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.2  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 342 CKLCLTLDG*CCYFIVFSIAVLQL 271
           CKL LT D  CC   + ++  + L
Sbjct: 109 CKLWLTCDVLCCTASILNLCAIAL 132


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 342 CKLCLTLDG*CCYFIVFSIAVLQL 271
           CKL LT D  CC   + ++  + L
Sbjct: 109 CKLWLTCDVLCCTASILNLCAIAL 132


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 342 CKLCLTLDG*CCYFIVFSIAVLQL 271
           CKL LT D  CC   + ++  + L
Sbjct: 109 CKLWLTCDVLCCTASILNLCAIAL 132


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 164 SSFSLVVLGTFPLIVMFLLAISLAIRILCL 75
           +S ++ +LGT+   +MF++A S+   IL L
Sbjct: 287 TSDAVPLLGTYFNCIMFMVASSVVSTILIL 316


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +3

Query: 117  HHNEGECTQNYQGKRRPISCGTLAP 191
            H+N G     Y+     ++ GT+AP
Sbjct: 1537 HNNAGFAVAEYEFATLTVTGGTIAP 1561


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,717
Number of Sequences: 438
Number of extensions: 3449
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)