Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0306.Seq
(598 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu... 81 2e-14
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2... 73 5e-12
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico... 45 0.002
UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=... 38 0.18
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea... 37 0.31
UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7; C... 37 0.41
UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recogniti... 35 1.3
UniRef50_Q2GY91 Cluster: Putative uncharacterized protein; n=1; ... 35 1.3
UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6; Plasmodiu... 34 2.2
UniRef50_Q6UAN5 Cluster: Class I helical cytokine receptor numbe... 33 3.9
UniRef50_Q62098 Cluster: Mus musculus ORFs (putative primordial ... 33 3.9
UniRef50_Q5CWG0 Cluster: Transcription elongation factor, SPT6-l... 33 5.1
UniRef50_UPI0000E4776D Cluster: PREDICTED: similar to ADP-ribosy... 33 6.7
UniRef50_Q9FXJ8 Cluster: F5A9.21; n=8; core eudicotyledons|Rep: ... 33 6.7
UniRef50_Q37400 Cluster: NADH dehydrogenase, subunit 2; n=1; All... 33 6.7
UniRef50_UPI0000E821B3 Cluster: PREDICTED: similar to Flag; n=1;... 32 8.9
UniRef50_Q1VX72 Cluster: Putative uncharacterized protein; n=1; ... 32 8.9
UniRef50_A5ZV91 Cluster: Putative uncharacterized protein; n=1; ... 32 8.9
>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
nubilalis|Rep: Reverse transcriptase - Ostrinia
nubilalis (European corn borer)
Length = 497
Score = 81.0 bits (191), Expect = 2e-14
Identities = 35/63 (55%), Positives = 45/63 (71%)
Frame = -3
Query: 449 KLAKTQRAMERSMLSIRLSDRIRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCKTNKWS 270
+L TQRAMER+ML + L DRIRN EIRR+T+VTDI RI +KW W GH+ R +W
Sbjct: 379 RLKVTQRAMERAMLGVSLRDRIRNEEIRRRTRVTDIARRIAKIKWQWAGHIARRADGRWG 438
Query: 269 KQV 261
++V
Sbjct: 439 RKV 441
Score = 50.8 bits (116), Expect = 2e-05
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = -2
Query: 249 PRGDTRRQGRPKTRWSDDIRLTLGPYWTRVAEDRAQWRELEEAY 118
PR R GRP TRW+DD+ G W + A+DR+ W+ L EA+
Sbjct: 446 PRAGRRSVGRPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAF 489
>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
F28E10.3 [imported] - Caenorhabditis elegans; n=4;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
protein F28E10.3 [imported] - Caenorhabditis elegans -
Strongylocentrotus purpuratus
Length = 824
Score = 72.9 bits (171), Expect = 5e-12
Identities = 37/87 (42%), Positives = 49/87 (56%)
Frame = -3
Query: 470 LTDKHREKLAKTQRAMERSMLSIRLSDRIRNWEIRRKTKVTDIITRIENLKWSWTGHMLR 291
LT K KLA +Q MERS+LSI DR N IR +TKV DI+ + KW+W GH+ R
Sbjct: 311 LTSKMERKLAASQHNMERSILSITYKDRKTNKWIREQTKVQDILEAEKRRKWNWAGHISR 370
Query: 290 CKTNKWSKQVTLGIQEGTPEDRGDQKR 210
N+WS +T +RG Q++
Sbjct: 371 RNDNRWSSAITHWTPYEGKRNRGRQRK 397
>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
eudicotyledons|Rep: Polyprotein, putative - Solanum
demissum (Wild potato)
Length = 868
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/83 (28%), Positives = 39/83 (46%)
Frame = -3
Query: 458 HREKLAKTQRAMERSMLSIRLSDRIRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCKTN 279
H K+ + M R M SD+IRN IR K V ++ ++ + W GH+ R +
Sbjct: 575 HVHKMHVAEMRMLRWMCGHTRSDKIRNEVIREKVGVASVVDKLREARLRWFGHVKRRSAD 634
Query: 278 KWSKQVTLGIQEGTPEDRGDQKR 210
++ + + EGT RG K+
Sbjct: 635 APVRRCEVMVVEGTRRGRGRPKK 657
>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
Papilionoideae|Rep: Reverse transcriptase family member
- Glycine max (Soybean)
Length = 377
Score = 37.9 bits (84), Expect = 0.18
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = -3
Query: 473 ALTDKHREKLAKTQRAMERSMLSIRLSDRIRNWEIRRKTKVTDIITRIENLKWSWTGHML 294
A+ +H K+ + M R M D+IRN IR + V I+ ++ + W GH+
Sbjct: 254 AVKSQHENKVGVAEMRMLRWMCGKTRQDKIRNEAIRERVGVAPIVEKMVENRLRWFGHVE 313
Query: 293 RCKTNKWSKQVTLGIQEGTPEDRGDQKR 210
R + ++V + T RG K+
Sbjct: 314 RRPVDSVLRRVDQMERRQTIRGRGRPKK 341
>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase, partial; n=7;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase, partial -
Strongylocentrotus purpuratus
Length = 787
Score = 37.1 bits (82), Expect = 0.31
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = -3
Query: 470 LTDKHREKLAKTQRAMERSMLSIRLSDRIRNWEIRRKTKV-TDIITRIENLKWSWTGHML 294
L R KL + R++L + L D+IRN EIR++ + + I I W GH+L
Sbjct: 395 LRKSDRNKLEVFEMRCLRTILGVHLMDKIRNEEIRQRLNIPSTICEEITKRCLKWFGHVL 454
Query: 293 R 291
R
Sbjct: 455 R 455
>UniRef50_Q10126 Cluster: Uncharacterized protein F52C9.6; n=7;
Caenorhabditis elegans|Rep: Uncharacterized protein
F52C9.6 - Caenorhabditis elegans
Length = 279
Score = 36.7 bits (81), Expect = 0.41
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = -3
Query: 452 EKLAKTQRAMERSMLSIRLSDR----IRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCK 285
E++ T ++ER ++ I L+ + + +IR ++V D + ++ K W GH+ R K
Sbjct: 151 ERVRITHASLERRLVGITLTQQRERDLHREDIRVMSQVRDPLNFVKKRKLGWAGHVARRK 210
Query: 284 TNKWSKQVT 258
+W+ +T
Sbjct: 211 DGRWTTLMT 219
>UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition
motif); Calcium-binding EF- hand; n=1; Medicago
truncatula|Rep: RNA-binding region RNP-1 (RNA
recognition motif); Calcium-binding EF- hand - Medicago
truncatula (Barrel medic)
Length = 559
Score = 35.1 bits (77), Expect = 1.3
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = -3
Query: 473 ALTDKHREKLAKTQRAMERSMLSIRLSDRIRNWEIRRKTKVTDIITRIENLKWSWTGHML 294
A+ +H +++ + M R M DRIRN IR + V I+ ++ + W GH+
Sbjct: 296 AVKSQHENQVSVAEMRMLRWMSGKTRHDRIRNDTIRERVGVAPIVEKLVENRLRWFGHVE 355
Query: 293 R 291
R
Sbjct: 356 R 356
>UniRef50_Q2GY91 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 655
Score = 35.1 bits (77), Expect = 1.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 237 TRRQGRPKTRWSDDIRLTLGPYWTRVAEDRAQWRELEEAYATRHAE 100
T Q K R + + +G YW R E+ AQWR E A AE
Sbjct: 288 TMLQSPTKLRRHQENQAAMGRYWLRTEEEEAQWRAEAERRAVEEAE 333
>UniRef50_Q8I0W7 Cluster: Snrnp protein, putative; n=6;
Plasmodium|Rep: Snrnp protein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 1123
Score = 34.3 bits (75), Expect = 2.2
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -2
Query: 387 NSKLGNKKEDKSNGYNNSYRKS*MELDRTYATLQNKQV--E*TGYFRYPRGDTRRQGRPK 214
NS ++ + + YNN+ + +L + T++N+ V E Y +Y R DT+ RPK
Sbjct: 174 NSGSEEEESNDDDDYNNNKDEKKEKLIKKNITMKNQIVIKEPIKYNKYERSDTKGSVRPK 233
Query: 213 TRWSDD 196
T ++D+
Sbjct: 234 THYNDN 239
>UniRef50_Q6UAN5 Cluster: Class I helical cytokine receptor number
21; n=3; Tetraodontidae|Rep: Class I helical cytokine
receptor number 21 - Tetraodon nigroviridis (Green
puffer)
Length = 528
Score = 33.5 bits (73), Expect = 3.9
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Frame = -3
Query: 341 ITRIEN--LKWSWTGHML--RCKTNKWSKQVTLGIQEGTPEDRG 222
+T+ EN L+W WTG M+ R + KWS+ TL + T D G
Sbjct: 134 LTQRENSSLQWKWTGRMVGKRDRGVKWSRGATLSLSSVTLADSG 177
>UniRef50_Q62098 Cluster: Mus musculus ORFs (putative primordial
protein), complete cds; n=3; Tetrapoda|Rep: Mus musculus
ORFs (putative primordial protein), complete cds - Mus
musculus (Mouse)
Length = 196
Score = 33.5 bits (73), Expect = 3.9
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Frame = +3
Query: 186 LGVYHRSI--SFLVAPVFWCPLLDT*SNLFTPLVCFAT*HMSCPTPFKIFY-----TSYY 344
+ VYH SI S + ++ L +++ L C T ++SC + + Y S Y
Sbjct: 33 MSVYHLSIYLSIIYLSIYLSIYLSIYLSIY--LSCL-TVYLSCLSVYLSVYHMSVCLSIY 89
Query: 345 IRYFCLPSYFPISNSVTKSDTQHASFHCSLCFSKFFSMF 461
+ Y CL Y I S+ S + FH S+C S + S +
Sbjct: 90 LSYVCLSIYLSIYVSIYLSIYHMSVFHLSVCLSIYLSTY 128
>UniRef50_Q5CWG0 Cluster: Transcription elongation factor,
SPT6-like; n=3; Cryptosporidium|Rep: Transcription
elongation factor, SPT6-like - Cryptosporidium parvum
Iowa II
Length = 2232
Score = 33.1 bits (72), Expect = 5.1
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = -3
Query: 563 NERLKI*VYISRERLSTLDPPLHDLRM*DMALTDKHREKLAKTQRAMERSMLSIR 399
NERL + YIS ++ + PPL+D + + D KL + + ++ +LSIR
Sbjct: 584 NERLDV-PYISLHKMHLIQPPLNDFLLGKIVFLDSIYYKLKLSIESFQQKLLSIR 637
>UniRef50_UPI0000E4776D Cluster: PREDICTED: similar to
ADP-ribosylation factor guanine nucleotide-exchange
factor 2 (brefeldin A-inhibited), partial; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
ADP-ribosylation factor guanine nucleotide-exchange
factor 2 (brefeldin A-inhibited), partial -
Strongylocentrotus purpuratus
Length = 839
Score = 32.7 bits (71), Expect = 6.7
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 124 LLQLSPLGSVLSNSGPVWS*G*AYIIAPSRFWS-PLSSGVPSWIPKV-TCLLHLFVLQRS 297
+L L L SVL N+GPV+ +I A ++ LS S +P+V C L +F+ S
Sbjct: 393 ILSLQLLLSVLQNAGPVFRTNEMFITAIKQYLCVALSKNGVSSVPEVFECSLAIFLTLLS 452
Query: 298 ICPVQLHLRFSIRVIISVTFVFLL 369
+ + HL+ I V F+ +L
Sbjct: 453 L--FKTHLKMQIEVFFKEIFLNIL 474
>UniRef50_Q9FXJ8 Cluster: F5A9.21; n=8; core eudicotyledons|Rep:
F5A9.21 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1705
Score = 32.7 bits (71), Expect = 6.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 190 PNPRTILDQSC*GPSPMERAGGGLCHEARRTPRYTIRNNKQKKKNVNFMV 41
P P I+ S +ER GG H R +PR+ R ++ ++N++ V
Sbjct: 1487 PLPPNIIPHSMAAKEDLERRAGGARHSQRLSPRHEEREKRRSEENLSVSV 1536
>UniRef50_Q37400 Cluster: NADH dehydrogenase, subunit 2; n=1;
Allomyces macrogynus|Rep: NADH dehydrogenase, subunit 2
- Allomyces macrogynus
Length = 474
Score = 32.7 bits (71), Expect = 6.7
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Frame = +1
Query: 226 LSSGVPSWIPKVTCLLHLFVLQRS--ICPVQLHLRFSIRVIISVTFVFLLISQF 381
LSSGV +I ++ LL LF++ R + ++ L FSI +I++ F + LIS F
Sbjct: 60 LSSGVEMYIYIISILLILFIIGREELVAEYRIVLGFSILGMITLIFSYDLISTF 113
>UniRef50_UPI0000E821B3 Cluster: PREDICTED: similar to Flag; n=1;
Gallus gallus|Rep: PREDICTED: similar to Flag - Gallus
gallus
Length = 89
Score = 32.3 bits (70), Expect = 8.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 179 DHTGPELLRTEPNGESWRRPMPRGTPN 99
D GP+ +PNG +WR PM RG PN
Sbjct: 58 DTMGPQWYVEDPNG-TWRTPMGRGDPN 83
>UniRef50_Q1VX72 Cluster: Putative uncharacterized protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: Putative
uncharacterized protein - Psychroflexus torquis ATCC
700755
Length = 340
Score = 32.3 bits (70), Expect = 8.9
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 225 PVFWCPLLDT*SNLFTPLVCFAT*HMSCPTPFKIFYTSYYIRYFCLPSYFPISNSVTKS 401
PVFWC L+D ++++ + +A + T ++ + + + + +YFPISNS T S
Sbjct: 170 PVFWCSLIDEVKSVYSGDLTYAE---NWDTHTEVHFWD-SLDFIGIDAYFPISNSKTPS 224
>UniRef50_A5ZV91 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus obeum ATCC 29174|Rep: Putative
uncharacterized protein - Ruminococcus obeum ATCC 29174
Length = 206
Score = 32.3 bits (70), Expect = 8.9
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = -1
Query: 571 KEXMKD*RSRYTYQEKDFQHLILPCMTYGCETWH*LTNIEK--NLLKHREQWKEAC 410
KE K+ + R++Y EK + L T+ +TW + N EK NL++ RE WK C
Sbjct: 148 KEEWKNLKIRFSYPEK-YWKLANYYYTHR-KTWISVKNTEKLQNLIRQREAWKRYC 201
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,690,206
Number of Sequences: 1657284
Number of extensions: 12845528
Number of successful extensions: 35083
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 33712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35051
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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