Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0306.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0542 + 24777453-24777632,24777654-24778478,24778576-247793...    29   2.1  
02_05_0029 - 25194827-25195095,25195129-25197970                       29   2.1  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    29   2.8  
03_02_0549 - 9395978-9396428,9396517-9396863                           28   4.9  
01_06_1514 - 37892552-37893074,37893291-37893367,37893471-378935...    28   4.9  
11_06_0550 + 24879074-24881290                                         28   6.5  
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     27   8.6  
11_06_0541 + 24771145-24775479                                         27   8.6  

>11_06_0542 +
           24777453-24777632,24777654-24778478,24778576-24779319,
           24779422-24780354,24780456-24780938,24780969-24781082,
           24781240-24781636,24781732-24782024,24782392-24782802
          Length = 1459

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +3

Query: 297 HMSCPTPFKIFYTSYYIRYFCLPSYFPISNSVTKSDTQHASFHCSLCFSKFFSMFV 464
           + SC     IF   Y +R+  +   + +   +TK D   A  H   CF     M++
Sbjct: 828 YKSCFLYLAIFPPGYPVRWSTIVGRWVVEGLITKEDWPSAVHHAERCFDTLIDMWL 883


>02_05_0029 - 25194827-25195095,25195129-25197970
          Length = 1036

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +1

Query: 148 SVLSNSGPVWS*G*AYIIAPSRFWSPLSSGVPSWIPKVTCLLHLFVLQRS 297
           S LS S P W    A +      W+ LS  +P+WI     L HLF L  S
Sbjct: 452 SHLSGSVPSWVANFAQLKVLDLSWNKLSGNIPAWIGN---LEHLFYLDLS 498


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 448 FSLCLSVSAMSHIRKS---CKGGSSVESLSLDMY 540
           FSLC S   + H  K     KGGS+V+S ++D Y
Sbjct: 232 FSLCSSYRDIMHCNKKPFYLKGGSTVDSSTMDSY 265


>03_02_0549 - 9395978-9396428,9396517-9396863
          Length = 265

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 321 KIFYTSYYIRYFCLPSYFPISNSVT 395
           +I Y+S  +RY   P YFP++ S T
Sbjct: 226 RILYSSCMVRYEIYPFYFPLATSST 250


>01_06_1514 -
           37892552-37893074,37893291-37893367,37893471-37893587,
           37893826-37893926,37895077-37895146,37895318-37895415,
           37896326-37896419,37896792-37896882,37897222-37897547,
           37898193-37898278,37899078-37899417
          Length = 640

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = -3

Query: 419 RSMLSIRLSDRIRNWEIRRKTKVTDIITRIENLK 318
           + +LSIR    + ++EI R TK  D+I R++NLK
Sbjct: 603 KELLSIRRMLPVIDFEIDR-TKAMDLIDRVDNLK 635


>11_06_0550 + 24879074-24881290
          Length = 738

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/56 (25%), Positives = 22/56 (39%)
 Frame = +3

Query: 297 HMSCPTPFKIFYTSYYIRYFCLPSYFPISNSVTKSDTQHASFHCSLCFSKFFSMFV 464
           + SC     IF   Y +R   +   + +   +TK D   A  H   CF     M++
Sbjct: 13  YKSCFLYLAIFPPGYPVRRSTIVGRWVVEGLITKEDWPSAVHHAERCFDTLIDMWL 68


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 297 HMSCPTPFKIFYTSYYIRYFCLPSYFPISNSVTKSDTQHASFHCSLCF 440
           + SC     IF   Y IR   L   + +   +TK D   A  H   CF
Sbjct: 666 YKSCLLYLSIFPHGYSIRRSTLVECWVVEGLITKEDWPSAIHHAERCF 713


>11_06_0541 + 24771145-24775479
          Length = 1444

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +3

Query: 297 HMSCPTPFKIFYTSYYIRYFCLPSYFPISNSVTKSDTQHASFHCSLCF 440
           + SC     IF   Y IR   L   + +   +TK D   A  H   CF
Sbjct: 724 YKSCLLYLSIFPHGYSIRRSTLVERWVVEGLITKEDWPSAIHHAERCF 771


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,198,321
Number of Sequences: 37544
Number of extensions: 347822
Number of successful extensions: 937
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)