Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0306.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52219-1|AAC50614.1|  613|Homo sapiens melatonin-related recepto...    31   3.1  
BC105684-1|AAI05685.1|  613|Homo sapiens G protein-coupled recep...    31   3.1  
BC105683-1|AAI05684.1|  617|Homo sapiens GPR50 protein protein.        31   3.1  
BC103696-1|AAI03697.1|  617|Homo sapiens GPR50 protein protein.        31   3.1  

>U52219-1|AAC50614.1|  613|Homo sapiens melatonin-related receptor
           protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 207 ISFLVAPVFWCPLLDT*SNLFTPLVCFAT*HMSCPTPFKIFYTSYYIRYF 356
           + FL+  V WCP+     N+ T LV  +   M+   P  ++  +Y+I YF
Sbjct: 241 VIFLLFAVCWCPI-----NVLTVLVAVSPKEMAGKIPNWLYLAAYFIAYF 285


>BC105684-1|AAI05685.1|  613|Homo sapiens G protein-coupled receptor
           50 protein.
          Length = 613

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 207 ISFLVAPVFWCPLLDT*SNLFTPLVCFAT*HMSCPTPFKIFYTSYYIRYF 356
           + FL+  V WCP+     N+ T LV  +   M+   P  ++  +Y+I YF
Sbjct: 241 VIFLLFAVCWCPI-----NVLTVLVAVSPKEMAGKIPNWLYLAAYFIAYF 285


>BC105683-1|AAI05684.1|  617|Homo sapiens GPR50 protein protein.
          Length = 617

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 207 ISFLVAPVFWCPLLDT*SNLFTPLVCFAT*HMSCPTPFKIFYTSYYIRYF 356
           + FL+  V WCP+     N+ T LV  +   M+   P  ++  +Y+I YF
Sbjct: 241 VIFLLFAVCWCPI-----NVLTVLVAVSPKEMAGKIPNWLYLAAYFIAYF 285


>BC103696-1|AAI03697.1|  617|Homo sapiens GPR50 protein protein.
          Length = 617

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 207 ISFLVAPVFWCPLLDT*SNLFTPLVCFAT*HMSCPTPFKIFYTSYYIRYF 356
           + FL+  V WCP+     N+ T LV  +   M+   P  ++  +Y+I YF
Sbjct: 241 VIFLLFAVCWCPI-----NVLTVLVAVSPKEMAGKIPNWLYLAAYFIAYF 285


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,046,777
Number of Sequences: 237096
Number of extensions: 2085907
Number of successful extensions: 8624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8624
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)