Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0306.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    42   3e-04
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    38   0.007
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    36   0.017
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    36   0.017
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.017
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr...    28   4.4  
AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical ...    28   5.8  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
 Frame = -3

Query: 452 EKLAKTQRAMERSMLSIRLSDR----IRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCK 285
           E++  T  A+ER ++ + L+++    I   E+R K+K+ D +  I+  K  W GH+ R  
Sbjct: 74  ERVRVTHAALERKLVGLTLTEQRERNIHREEVREKSKLRDPLIHIKKRKLGWAGHVARRT 133

Query: 284 TNKWS 270
             +W+
Sbjct: 134 DGRWT 138



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
 Frame = -2

Query: 249 PRGDTRRQGRPKTRWSDDIRL---------TLGPYWTRVAEDRAQWRELEEA 121
           PR + R  GRP  RW+D +R           +   W+  A+DR  W+ +  A
Sbjct: 146 PRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAWKAVIRA 197


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = -3

Query: 452 EKLAKTQRAMERSMLSIRLSDR----IRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCK 285
           E++  T  ++ER ++ I L+ +    +   +IR+ + V D +  ++  K  W GH+ R K
Sbjct: 289 ERVRITHASLERRLVGITLTQQRERDLHREDIRKMSLVRDPLNFVKKRKLGWAGHVARRK 348

Query: 284 TNKWSKQVT 258
             +W+  +T
Sbjct: 349 DGRWTTLMT 357



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -2

Query: 249 PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
           P G  R  GRP  RW+D +R  +            W+ +A+DR +W
Sbjct: 361 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEW 406


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = -3

Query: 452 EKLAKTQRAMERSMLSIRLSDR----IRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCK 285
           E++  T  ++ER ++ I L+ +    +   +IR  + V D +  ++  K  W GH+ R K
Sbjct: 763 ERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRK 822

Query: 284 TNKWSKQVT 258
             +W+  +T
Sbjct: 823 DGRWTTLMT 831



 Score = 29.1 bits (62), Expect = 2.5
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -2

Query: 249 PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
           P G  R  GRP  RW+D +R  +            W+ +A+DR +W
Sbjct: 835 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKEW 880


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = -3

Query: 452  EKLAKTQRAMERSMLSIRLSDR----IRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCK 285
            E++  T  ++ER ++ I L+ +    +   +IR  + V D +  ++  K  W GH+ R K
Sbjct: 938  ERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRK 997

Query: 284  TNKWSKQVT 258
              +W+  +T
Sbjct: 998  DGRWTTLMT 1006



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -2

Query: 249  PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
            P G  R  GRP  RW+D +R  +            W+ +A+DR QW
Sbjct: 1010 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 1055


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 36.3 bits (80), Expect = 0.017
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = -3

Query: 452 EKLAKTQRAMERSMLSIRLSDR----IRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCK 285
           E++  T  ++ER ++ I L+ +    +   +IR  + V D +  ++  K  W GH+ R K
Sbjct: 677 ERVRITHASLERRLVGITLTQQRERDLHREDIRTMSLVRDPLNFVKKRKLGWAGHVARRK 736

Query: 284 TNKWSKQVT 258
             +W+  +T
Sbjct: 737 DGRWTTLMT 745



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
 Frame = -2

Query: 249 PRGDTRRQGRPKTRWSDDIRLTLGPY---------WTRVAEDRAQW 139
           P G  R  GRP  RW+D +R  +            W+ +A+DR QW
Sbjct: 749 PYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 794


>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
           protein W05B2.2 protein.
          Length = 1278

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 273 PLVCFAT*HMSCPTPFKIFYTSYYIRYFC 359
           P+ C      SCP  F+  Y+S  + YFC
Sbjct: 735 PMTCTPNSQNSCPLGFQCTYSSIRMLYFC 763


>AC024751-8|AAK21510.3|  369|Caenorhabditis elegans Hypothetical
           protein Y18H1A.7 protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 292 VAKQTSGVNRLL*VSKRGHQKTGATKNEMER*YTP-NPRTILDQSC*GPSPMERAGG 125
           +AK T  + +L+ +SK   +K   T N  E    P   +T+L+    G SP  ++ G
Sbjct: 156 IAKSTPKIRKLVKISKICSEKLPKTANSTENQDAPATEQTMLNNRAAGSSPSRKSPG 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,062,567
Number of Sequences: 27780
Number of extensions: 308773
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)