Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0306.Seq
(598 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 25 0.75
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.75
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 25 0.75
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 23 2.3
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 23 2.3
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 22 4.0
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 22 5.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 22 5.3
AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein. 22 5.3
D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein. 21 9.2
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 21 9.2
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 21 9.2
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 21 9.2
AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase pro... 21 9.2
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 368 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 407
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 368 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 407
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 368 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 407
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 368 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 407
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 368 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 407
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 368 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 407
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 436 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 475
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 24.6 bits (51), Expect = 0.75
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 208 SRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRF 327
S F +P+S+G P+ + + L L +Q + + LRF
Sbjct: 436 SAFGTPISTGRPATVEDTSASLPLSGMQEELHTILKELRF 475
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.0 bits (47), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 429 SNGKKHVEYQT**QNSKLGNKKEDKSNGYNNSYRK 325
SN K+ Y N+ N + +N YNN+Y+K
Sbjct: 86 SNNYKYSNY-----NNYNNNYNNNYNNNYNNNYKK 115
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 384 SKLGNKKEDKSNGYNNSYRKS*MELDRTY 298
S N + +N YNN+Y + +L + Y
Sbjct: 92 SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.0 bits (47), Expect = 2.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 429 SNGKKHVEYQT**QNSKLGNKKEDKSNGYNNSYRK 325
SN K+ Y N+ N + +N YNN+Y+K
Sbjct: 86 SNNYKYSNY-----NNYNNNYNNNYNNNYNNNYKK 115
Score = 23.0 bits (47), Expect = 2.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 384 SKLGNKKEDKSNGYNNSYRKS*MELDRTY 298
S N + +N YNN+Y + +L + Y
Sbjct: 92 SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.2 bits (45), Expect = 4.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -2
Query: 429 SNGKKHVEYQT**QNSKLGNKKEDKSNGYNNSYRK 325
SN K+ Y N N + +N YNN+Y+K
Sbjct: 319 SNNYKYSNYNNYNNNY---NNYNNYNNNYNNNYKK 350
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 3 FFYNNKALYFRTITM 47
+FYN K Y TIT+
Sbjct: 123 YFYNGKHSYVHTITV 137
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +3
Query: 3 FFYNNKALYFRTIT 44
+FYN K Y TIT
Sbjct: 91 YFYNGKHSYLHTIT 104
>AY898652-1|AAX83121.1| 349|Apis mellifera AKH receptor protein.
Length = 349
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 29 FPNYNHEIYIFFFLFVISY 85
FP Y HEI F ++ Y
Sbjct: 195 FPTYTHEITYSLFGMIMMY 213
>D79208-1|BAA11466.1| 567|Apis mellifera alpha-glucosidase protein.
Length = 567
Score = 21.0 bits (42), Expect = 9.2
Identities = 5/8 (62%), Positives = 8/8 (100%)
Frame = +1
Query: 232 SGVPSWIP 255
SG+P+W+P
Sbjct: 337 SGIPNWVP 344
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 21.0 bits (42), Expect = 9.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -2
Query: 387 NSKLGNKKEDKSNGYNNSY 331
N + N +N YNN+Y
Sbjct: 320 NKTIHNNNNYNNNNYNNNY 338
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 21.0 bits (42), Expect = 9.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 327 FYTSYYIRYFCLPSYFPISNSV 392
F+T Y +R FC P SV
Sbjct: 25 FFTMYLVRAFCRNCIHPTVFSV 46
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 21.0 bits (42), Expect = 9.2
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +3
Query: 327 FYTSYYIRYFCLPSYFPISNSV 392
F+T Y +R FC P SV
Sbjct: 473 FFTMYLVRAFCRNCIHPTVFSV 494
>AB253417-1|BAE86928.1| 567|Apis mellifera alpha-glucosidase
protein.
Length = 567
Score = 21.0 bits (42), Expect = 9.2
Identities = 5/8 (62%), Positives = 8/8 (100%)
Frame = +1
Query: 232 SGVPSWIP 255
SG+P+W+P
Sbjct: 337 SGIPNWVP 344
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,179
Number of Sequences: 438
Number of extensions: 4092
Number of successful extensions: 26
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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