Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0306.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g24706.1 68414.m03104 expressed protein                             33   0.19 
At5g19980.1 68418.m02378 integral membrane family protein contai...    32   0.33 
At3g12190.1 68416.m01520 hypothetical protein                          29   2.4  
At5g48540.1 68418.m06001 33 kDa secretory protein-related contai...    28   4.1  
At2g48040.1 68415.m06013 expressed protein                             28   5.4  
At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger) fa...    27   9.5  
At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger) fa...    27   9.5  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    27   9.5  

>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -1

Query: 190  PNPRTILDQSC*GPSPMERAGGGLCHEARRTPRYTIRNNKQKKKNVNFMV 41
            P P  I+  S      +ER  GG  H  R +PR+  R  ++ ++N++  V
Sbjct: 1582 PLPPNIIPHSMAAKEDLERRAGGARHSQRLSPRHEEREKRRSEENLSVSV 1631


>At5g19980.1 68418.m02378 integral membrane family protein contains
           Pfam profile: PF00892 Integral membrane protein; similar
           to LPG2 protein (GI:9998817)  [Leishmania mexicana]
          Length = 341

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
 Frame = +3

Query: 177 VLGLGVYHRSISFLVAPVFW----------CPLLDT*SNLFTPLVCFAT*HMSCPTPFKI 326
           + GL +Y+  +S ++APVFW            L +   NLF P   F++   SC   F I
Sbjct: 187 IWGLVLYNNLLSLMIAPVFWFLTGEFTEVFAALSENRGNLFEP-YAFSSVAASCVFGFLI 245

Query: 327 FYTSYYIRYFCLPSYFPISNSVTK 398
            Y  +  R     + F ++  V K
Sbjct: 246 SYFGFAARNAISATAFTVTGVVNK 269


>At3g12190.1 68416.m01520 hypothetical protein
          Length = 269

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 23/112 (20%), Positives = 49/112 (43%)
 Frame = -3

Query: 590 KKILVLERXNERLKI*VYISRERLSTLDPPLHDLRM*DMALTDKHREKLAKTQRAMERSM 411
           KK  ++++ N   K  +  +RE++  L          DM L  KH +++++     +   
Sbjct: 115 KKRFLVQKLNRERKFELKRTREQVEALQKN-------DMKLDVKHSKEMSEELLVQQEKY 167

Query: 410 LSIRLSDRIRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCKTNKWSKQVTL 255
             I    ++   +++  T+  D+  R  +L+W       RC+  +W K+  L
Sbjct: 168 EEILKKKKLEEKKLKDCTR--DLALREGDLRWVSMRMTKRCEELRWEKKKNL 217


>At5g48540.1 68418.m06001 33 kDa secretory protein-related contains
           Pfam PF01657: Domain of unknown function, duplicated in
           33 KDa secretory proteins
          Length = 263

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 321 KIFYTSYYIRYFCLPSYFPISNSVT 395
           ++ Y+S Y+RY   P YFP+  + T
Sbjct: 225 RVLYSSCYVRYEFYPFYFPLDPAKT 249


>At2g48040.1 68415.m06013 expressed protein 
          Length = 294

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 395 SDRIRNWEIRRKTKVTDIITRIENLKWSWTGHMLRCKTN 279
           S  +R++E +      DI+    N KW W+ H L+   N
Sbjct: 161 SGDVRSFEDQTDEVSADILINHANFKWWWSFHNLKASEN 199


>At4g03510.2 68417.m00479 zinc finger (C3HC4-type RING finger)
           family protein (RMA1) identical to RING zinc finger
           protein RMA1 gi:3164222
          Length = 249

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 375 PISNSVTKSDTQHASFHCSLCFSKFFSMFVS*C 473
           PI+ SV   DT  ++F C++C        V+ C
Sbjct: 31  PITVSVPSDDTDDSNFDCNICLDSVQEPVVTLC 63


>At4g03510.1 68417.m00478 zinc finger (C3HC4-type RING finger)
           family protein (RMA1) identical to RING zinc finger
           protein RMA1 gi:3164222
          Length = 249

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 375 PISNSVTKSDTQHASFHCSLCFSKFFSMFVS*C 473
           PI+ SV   DT  ++F C++C        V+ C
Sbjct: 31  PITVSVPSDDTDDSNFDCNICLDSVQEPVVTLC 63


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = +1

Query: 205 PSRFWSPLSSGVPSWIPKVTCLLHLFVLQRSICPVQLHLRFSIRVIISVTFVFLLISQFR 384
           PS   S LSS  P     +  LL   +  R IC    HLRF + + +   ++F L+   R
Sbjct: 90  PSNLLSSLSSYRPVIARFLRKLLRYTLRARLIC---FHLRFLLLLAVPPLYIFFLVINLR 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,127
Number of Sequences: 28952
Number of extensions: 285261
Number of successful extensions: 741
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)