Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0305.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   1.6  
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    27   1.6  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    27   1.6  
SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr...    25   6.3  
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo...    25   6.3  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   6.3  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   8.4  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 9    PLAVPVTP-IQAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDP 173
            P A  + P  QA  V   V PAV+A +   PA+V    HP   P   I    ++DP
Sbjct: 1274 PTAQQIQPGKQASAVSSNV-PAVSASISTPPAVVPTVQHPQ--PTKQIPTAAVKDP 1326


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = -3

Query: 203 IHKCCYRQMYWILHSLCL--NQCCWNCRWMIRF-HHDGWSYIHKCCYRRMYGILHF 45
           I K   R       SLC+   Q CW+ R  + F +HDG + +   C   +  + HF
Sbjct: 107 IEKAVRRSNALDTESLCIISGQKCWHVRASVHFINHDG-NLVDAACIAVIAALCHF 161


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 141 TLIQAQRMQDPVHLAVAALMDIALAIVVEVYHPPAV 248
           T+  +Q   +  HLA+A+ +    A V+ VY P A+
Sbjct: 149 TVFASQSNVEAAHLALASTLAAKAAPVIHVYEPDAI 184


>SPCC70.06 |||nuclear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 458

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 21  PVTPIQAQKVQDPVHPAVA--ALMDIAPAIVVEAYHPPA 131
           P   ++ +K+Q  +HP           P++ V+AYH PA
Sbjct: 79  PEFELEERKLQHAIHPYELDPVSKQAHPSLAVKAYHRPA 117


>SPAC2F3.02 |||ER protein translocation subcomplex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 71  RRMYGILHFLSLNRCYW 21
           +++YG+   L+LNRC W
Sbjct: 82  KKLYGLALQLALNRCTW 98


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 341 VHXDAWSYIRKCLLPP 294
           V  +AWS+I KCL  P
Sbjct: 434 VSDEAWSFITKCLTEP 449


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
 Frame = +3

Query: 57   PVHPAVAALMDIAPAI-------VVEAYHPPAVPATLIQAQRMQDPVH 179
            P  P  A++   APAI       V E YHPP    T +    +Q P H
Sbjct: 908  PPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPP--VQQPSH 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,584
Number of Sequences: 5004
Number of extensions: 31066
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)