Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0305.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291... 33 0.13
10_08_0535 + 18613223-18613717,18615858-18616373 29 2.1
09_06_0354 - 22490833-22491417 29 2.7
12_02_1118 + 26210322-26212559 28 3.6
09_02_0200 + 5717867-5717872,5718049-5718351 28 3.6
02_04_0361 - 22359278-22359439,22362291-22362728 28 4.8
12_01_0220 - 1657554-1657620,1657943-1658109,1658110-1658267,165... 27 6.3
05_06_0148 + 25989595-25990956 27 8.4
02_05_0783 + 31723330-31723585,31723683-31723857,31723953-317241... 27 8.4
01_05_0482 + 22614097-22614729,22614859-22615182,22615291-226153... 27 8.4
>07_01_0389 -
2915191-2915604,2915696-2915752,2915867-2915922,
2916053-2916113,2916243-2916365,2916505-2916537,
2916617-2916709,2916839-2916934,2917025-2917203,
2917344-2917530,2918051-2918184,2918311-2918518,
2918598-2918633,2918785-2919241,2919633-2919736,
2920489-2920569,2920646-2920697,2920837-2920876,
2920991-2921085,2921241-2921383,2921899-2922006,
2922120-2922221,2922302-2922348,2922425-2922554,
2923173-2923304,2923404-2923616,2923709-2923963,
2924053-2924799
Length = 1460
Score = 33.1 bits (72), Expect = 0.13
Identities = 24/73 (32%), Positives = 33/73 (45%)
Frame = +3
Query: 27 TPIQAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVHLAVAALMDI 206
TP A V A A L + ++V + PPA+P+ L A R+ + A AAL D
Sbjct: 33 TPDDASS-SSAVDDAAALLAEAGCTLLVPLHQPPALPSPLSFAPRLARALAAADAALRDR 91
Query: 207 ALAIVVEVYHPPA 245
LA + PA
Sbjct: 92 LLAGLAAFAESPA 104
>10_08_0535 + 18613223-18613717,18615858-18616373
Length = 336
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +3
Query: 3 FRPLAVPVTPIQAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVHL 182
FRP AVPV P + ++ P+ + L P I ++ PPA P T R +
Sbjct: 29 FRPAAVPVVPPE-RRGFIPLADRIRDLGAAFPRINLDGLVPPAPPQTHPTVAREERASAS 87
Query: 183 AVAAL 197
AVA L
Sbjct: 88 AVAGL 92
>09_06_0354 - 22490833-22491417
Length = 194
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 21 PVTPIQAQKVQDPVHPAVAA 80
PV P+Q+Q+ QDP P AA
Sbjct: 62 PVVPLQSQETQDPNEPKAAA 81
>12_02_1118 + 26210322-26212559
Length = 745
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 93 APAIVVEAYHPPAVPATLIQAQRMQDPVHLAVAALMDIALAIVVEVYHPP 242
A +VV+ Y P A PA+ + + P AL ++ A VV V H P
Sbjct: 690 ASVLVVKRYDPAANPASKRYDPKARPPAATEEDALDELTGAAVVPVAHSP 739
>09_02_0200 + 5717867-5717872,5718049-5718351
Length = 102
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 81 LMDIAPAIVVEAYHPPAV-PATLIQAQRMQDPVHLAVAALMDIALAIVVEVYHPPAVP 251
++++ P + EA H + P+T ++A+ + DP + A++ LA VV+ P P
Sbjct: 20 ILEMMPTQIGEAIHTYCLAPSTNLRAEDIPDPHPDLLPAILSAFLAPVVDSIRTPHTP 77
>02_04_0361 - 22359278-22359439,22362291-22362728
Length = 199
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 93 APAIVVEAYHPPAVPATLIQAQRMQDPVHLAVAALMDIALAIVVE 227
APA+ PP P T +Q + P + AA A+A VVE
Sbjct: 27 APALAPPPPTPPPEPETKLQLEMEPQPERVEEAAKKPAAVAAVVE 71
>12_01_0220 -
1657554-1657620,1657943-1658109,1658110-1658267,
1658362-1658447,1658559-1658808,1659194-1660320,
1662207-1662351,1663555-1663696,1663775-1663828,
1663914-1663985,1664710-1664778,1664885-1664926,
1665024-1665092,1665257-1665394,1665518-1665628,
1665704-1665836,1666834-1666889,1667191-1667901
Length = 1198
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 120 HPPAVPATLIQAQRMQDPVHLAVAALMDIALAIVVEVYH 236
H P P L+ + ++ P+ + +L +A+ VV++YH
Sbjct: 581 HSPPSPILLLLVEGVRVPLPRTIRSLALVAMITVVDLYH 619
>05_06_0148 + 25989595-25990956
Length = 453
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 12 LAVPVTPIQAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQA-QRMQDPVHLAV 188
+AVP P V PAVA + P+I PP P Q++ D + L V
Sbjct: 17 IAVPTPPASTADVAASSAPAVARIAAANPSISFHNLPPPDYPEPDPDGFQQLLDVIRLTV 76
Query: 189 AALM 200
L+
Sbjct: 77 PILL 80
>02_05_0783 +
31723330-31723585,31723683-31723857,31723953-31724166,
31724388-31725032,31725199-31725335,31725440-31725554
Length = 513
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = +3
Query: 51 QDPVHPAVAALMDIAPAIVVEAYHPPAVPATLI--QAQRMQDPVHLAVAALMDIALAIVV 224
Q+ + P +++M + + P + AT + +R DP++ ++D +
Sbjct: 287 QEMLAPTTSSIMCDDEIVSSSTFSAPDLVATYVPRSMKRSHDPLNGTPDMILDEMAGNPL 346
Query: 225 EVYHPPAVPAH*FKHKE 275
E+Y PP++ A ++H E
Sbjct: 347 EMYFPPSLTA--YEHPE 361
>01_05_0482 +
22614097-22614729,22614859-22615182,22615291-22615396,
22615628-22615668
Length = 367
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/45 (42%), Positives = 22/45 (48%)
Frame = +3
Query: 69 AVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVHLAVAALMD 203
AVAA + APA + P A TLI A DP+ VA MD
Sbjct: 5 AVAAALAPAPA-TAPVFSPAAAGLTLIAAAAA-DPIAAVVAGAMD 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,799,683
Number of Sequences: 37544
Number of extensions: 237124
Number of successful extensions: 507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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