Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0305.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc...    29   1.4  
U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac...    29   1.4  
U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac...    29   1.4  
Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    27   5.7  
AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical ...    27   7.6  

>U77412-1|AAB63465.1| 1151|Caenorhabditis elegans O-linked GlcNAc
            transferase protein.
          Length = 1151

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 302  LPPDVLDXALFVLESVCWNCRWMIHFHHDG*SYIHKCC 189
            + P  LD  + +LE+V  +  W++ F + G  +I K C
Sbjct: 958  IDPSTLDMWIKILENVPKSILWLLRFPYQGEEHIRKYC 995


>U21320-2|ABC71824.1|  973|Caenorhabditis elegans O-linked glcnac
           transferase protein1, isoform b protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 302 LPPDVLDXALFVLESVCWNCRWMIHFHHDG*SYIHKCC 189
           + P  LD  + +LE+V  +  W++ F + G  +I K C
Sbjct: 780 IDPSTLDMWIKILENVPKSILWLLRFPYQGEEHIRKYC 817


>U21320-1|AAA62535.2| 1151|Caenorhabditis elegans O-linked glcnac
            transferase protein1, isoform a protein.
          Length = 1151

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 302  LPPDVLDXALFVLESVCWNCRWMIHFHHDG*SYIHKCC 189
            + P  LD  + +LE+V  +  W++ F + G  +I K C
Sbjct: 958  IDPSTLDMWIKILENVPKSILWLLRFPYQGEEHIRKYC 995


>Z74472-6|CAA98947.1| 1025|Caenorhabditis elegans Hypothetical
           protein F23H12.6 protein.
          Length = 1025

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -3

Query: 215 G*SYIHKCCYRQMYWILHSLCLNQCCW-NCRWMIRFHHDGWSYIHKCCYRRMYGILH 48
           G  YIH    +Q     H    ++CC+ N RW ++    G S++     R   G+LH
Sbjct: 623 GLQYIHHSPIKQ-----HGSLTSECCYINDRWQVKIGSYGLSFMQGVEKRTEDGLLH 674


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = -3

Query: 185 RQMYWILHSLCLNQCCWNCRW-MIRFHHDGWSYIHKCCYRR 66
           +Q  W  +S  +  CCWN  +  +      W    K C R+
Sbjct: 122 KQWCWQCNSEAIYHCCWNTAYCSVECQQGHWQIHRKFCRRK 162


>AF016687-8|AAK72065.1|  737|Caenorhabditis elegans Hypothetical
           protein T21D12.9c protein.
          Length = 737

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 353 WXIRVHXDAWSYIRKCLLPPDVLDXALFVLESVCWNC 243
           W  R+  D  S I KC  PP + D  +  +++    C
Sbjct: 462 WIYRLKLDKSSIIAKCSYPPPLADLYVVAIDTANLTC 498


>AF016687-7|AAK72063.1|  881|Caenorhabditis elegans Hypothetical
           protein T21D12.9a protein.
          Length = 881

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 353 WXIRVHXDAWSYIRKCLLPPDVLDXALFVLESVCWNC 243
           W  R+  D  S I KC  PP + D  +  +++    C
Sbjct: 462 WIYRLKLDKSSIIAKCSYPPPLADLYVVAIDTANLTC 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,516,780
Number of Sequences: 27780
Number of extensions: 188458
Number of successful extensions: 406
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)