Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0305.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   7.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.4  
AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly pro...    21   9.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
 Frame = -3

Query: 146 QCCWNC----RWMIRFHHD 102
           QCCW+C    ++ IR H D
Sbjct: 604 QCCWHCFNCTQYQIRDHKD 622


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +2

Query: 296 AVASTYGYSSRHXGGRVXSTGSSXQLMQAQ 385
           A    YG+   H G  + S+ SS Q  Q Q
Sbjct: 799 AAQMIYGHQQSHHGLHINSSPSSVQSGQQQ 828


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = -3

Query: 32 RCYWYCQW 9
          +CY YC W
Sbjct: 70 KCYMYCLW 77


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 173 WILHSLCLNQCCWNCR 126
           W+L  +CL   C N R
Sbjct: 4   WLLLMVCLGIACQNIR 19


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 191 CYRQMYWILH 162
           C+  MYWI++
Sbjct: 418 CFNLMYWIIY 427


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 191 CYRQMYWILH 162
           C+  MYWI++
Sbjct: 418 CFNLMYWIIY 427


>AY078401-1|AAL83704.1|   27|Apis mellifera major royal jelly
           protein MRJP4 protein.
          Length = 27

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 173 WILHSLCLNQCCWNCR 126
           W+L  +CL   C N R
Sbjct: 4   WLLLMVCLGIACQNIR 19


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = -3

Query: 191 CYRQMYWILH 162
           C+  MYWI++
Sbjct: 356 CFNLMYWIIY 365


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,407
Number of Sequences: 438
Number of extensions: 2391
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)