Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0305.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    29   2.3  
At1g05410.1 68414.m00549 expressed protein                             29   2.3  
At3g03480.1 68416.m00346 transferase family protein similar to h...    28   3.0  
At1g51090.1 68414.m05744 heavy-metal-associated domain-containin...    28   3.0  
At1g23340.2 68414.m02919 expressed protein  similar to At1g70550...    27   9.3  
At1g23340.1 68414.m02918 expressed protein  similar to At1g70550...    27   9.3  

>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 3   FRPLAVPVTPIQAQKVQDPVHPAVAALMDIAPAIVVEAYH-PPAVPAT 143
           ++P  +P TPI+    + PV P    +  + P +       PP  P T
Sbjct: 59  YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQPPT 106


>At1g05410.1 68414.m00549 expressed protein
          Length = 471

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 155 CLNQCCWNCRWMIRFHHDGWSYIHKC 78
           C++ CC  C  +I   H G+SYI KC
Sbjct: 184 CVDCCCILCCKLISLEHGGYSYI-KC 208


>At3g03480.1 68416.m00346 transferase family protein similar to
           hypersensitivity-related gene GB:CAA64636 [Nicotiana
           tabacum]; contains Pfam transferase family domain
           PF00248
          Length = 454

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 323 SYIRKCLLPPDVLDXALFVLESVCWNCR 240
           S IRK LLPPD+ + +   L S  W CR
Sbjct: 254 SAIRK-LLPPDLHNTSFEALSSFLWRCR 280


>At1g51090.1 68414.m05744 heavy-metal-associated domain-containing
           protein  contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 171

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 18/48 (37%), Positives = 21/48 (43%)
 Frame = +3

Query: 36  QAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVH 179
           Q Q  Q P  PA A     APA+V  A  P  V ++  Q   M  P H
Sbjct: 84  QPQPPQKPTAPAPAPAQAQAPALVRPAPVPVLVSSSAPQPMPMWQPYH 131


>At1g23340.2 68414.m02919 expressed protein  similar to At1g70550,
           At1g10750 contains Pfam profile PF03080: Arabidopsis
           proteins of unknown function
          Length = 409

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 36  QAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVHLAV 188
           Q QK+  P    + +  D      V ++H PA    L+Q QR  DP  + +
Sbjct: 50  QLQKINKPAIKTIHS-SDGDTIDCVPSHHQPAFDHPLLQGQRPMDPPEMPI 99


>At1g23340.1 68414.m02918 expressed protein  similar to At1g70550,
           At1g10750 contains Pfam profile PF03080: Arabidopsis
           proteins of unknown function
          Length = 409

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 36  QAQKVQDPVHPAVAALMDIAPAIVVEAYHPPAVPATLIQAQRMQDPVHLAV 188
           Q QK+  P    + +  D      V ++H PA    L+Q QR  DP  + +
Sbjct: 50  QLQKINKPAIKTIHS-SDGDTIDCVPSHHQPAFDHPLLQGQRPMDPPEMPI 99


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,960,877
Number of Sequences: 28952
Number of extensions: 173418
Number of successful extensions: 278
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 278
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)