Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0304.Seq
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    30   0.23 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.52 
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   4.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   4.9  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   6.4  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 118 NTPVTIYYGHCAFFFSNLQSVKGMNFF 198
           NT V  YYGHC     N++S+K +NF+
Sbjct: 658 NTHVKSYYGHC-----NVESIKNVNFY 679


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 118 NTPVTIYYGHCAFFFSNLQSVKGMNFFDIY*MLLNINY 231
           N P T+Y+G CA    NL +V    F D + ++LN+N+
Sbjct: 525 NLP-TLYHGSCALLTDNLVTV----FLDAHDLVLNLNF 557


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 393 WNLWLDLSLKIILKKRQKFIE 455
           WN+WL    KI  K++ KF E
Sbjct: 370 WNMWLSQVQKINEKEKDKFYE 390


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 366 FFFYLNIFSIFS*LCTRL 313
           FFFY ++FS FS L T L
Sbjct: 110 FFFYFSLFSFFSFLFTSL 127


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +3

Query: 231 FYIIQEYMKH*HFGIMNWISLVVYELHSVAYIIMRXXXXXXXXXXTITLFITF*WNLWLD 410
           FY I E ++  H+   N    ++Y L  V Y   +          +  L   F W+ WL+
Sbjct: 155 FYYISEVLESLHYQ-GNKDPYLLY-LSGVVYRKRKQDSKAIDFLKSCVLKAPFFWSAWLE 212

Query: 411 LSLKI 425
           LSL I
Sbjct: 213 LSLSI 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,264
Number of Sequences: 5004
Number of extensions: 43211
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)