Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0304.Seq
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.43 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.43 
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.3  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 224 LIILHYTRIYETLTFWDYELDFP 292
           ++I  YT +  T+ ++DY  DFP
Sbjct: 283 MLIEAYTNLSMTMKYYDYGADFP 305



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 97  YSFSRH*RNSRSYFVLFNFNN 35
           ++FSR   ++ S + + NF+N
Sbjct: 490 FAFSRETEDNGSLYAILNFSN 510


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 224 LIILHYTRIYETLTFWDYELDFP 292
           ++I  YT +  T+ ++DY  DFP
Sbjct: 283 MLIEAYTNLSMTMKYYDYGADFP 305



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -2

Query: 97  YSFSRH*RNSRSYFVLFNFNN 35
           ++FSR   ++ S + + NF+N
Sbjct: 490 FAFSRETEDNGSLYAILNFSN 510


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -2

Query: 73  NSRSYFVLFNFNNVIYLNEIQYI 5
           N  +YF+L++FN++   ++  ++
Sbjct: 381 NEGTYFILYDFNDIFEKDQASFL 403


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = -2

Query: 73  NSRSYFVLFNFNNVIYLNEIQYI 5
           N  +YF+L++FN++   ++  ++
Sbjct: 381 NEGTYFILYDFNDIFEKDQASFL 403


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 280 TGFPWSSMNFTQSR 321
           TGFPW     TQ R
Sbjct: 352 TGFPWIDAIMTQLR 365


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 82  DVKMNNFILII*NTPVTIYYGHCAFFFSNLQSVKG 186
           DVK+ N +L I N      +G C      L S+ G
Sbjct: 722 DVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 756


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 82  DVKMNNFILII*NTPVTIYYGHCAFFFSNLQSVKG 186
           DVK+ N +L I N      +G C      L S+ G
Sbjct: 760 DVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 794


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,913
Number of Sequences: 438
Number of extensions: 3704
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)