Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0304.Seq
         (602 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52460.1 68418.m06509 F-box family protein contains F-box dom...    27   7.2  
At1g33750.1 68414.m04172 terpene synthase/cyclase family protein...    27   9.6  

>At5g52460.1 68418.m06509 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 493 KVIRDVEVSVVEFSMNFCLFFNIIFKDKSS 404
           K+I DV  SV   S+N    F ++FKD++S
Sbjct: 119 KIIVDVPSSVCLPSLNILRLFYVVFKDENS 148


>At1g33750.1 68414.m04172 terpene synthase/cyclase family protein
           similar to DELTA-CADINENE SYNTHASE ISOZYME A GB:Q43714
           from [Gossypium arboreum]
          Length = 603

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 233 LHYTRIYETLTFWDYELDFPGRL 301
           LHY R  +TLT W  ++D P +L
Sbjct: 293 LHYVRELKTLTKWWKDIDLPYKL 315


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,717,882
Number of Sequences: 28952
Number of extensions: 192796
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)