Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0303.Seq
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.38 
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   2.7  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.2  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   6.2  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   6.2  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   6.2  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   6.2  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    21   8.2  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 215 PNSSFKLP*SSLNRTDETPRDSDHTF*FTFTS 120
           P +SFKL  SS +  DE PR    T   TF++
Sbjct: 91  PTTSFKLKDSSSDSEDERPRPGGGTKYQTFSN 122


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 264 DIILVIYTNIVFVVN*LNK 320
           D++L IY+ +VF+   +NK
Sbjct: 212 DLVLPIYSQLVFMCKKINK 230


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 249 FGLCKDIILVIYTNIVFV 302
           F +C D I +I  NIV V
Sbjct: 78  FAICCDFIALIVVNIVHV 95


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 368 NMEDKETYKEFGNGQRK 418
           N  + E YKE  NG+RK
Sbjct: 204 NNNNIELYKEIFNGKRK 220


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 413 SGHFQTLYKFLYLPYF 366
           S HF  + +FL LP++
Sbjct: 70  SAHFSFMSRFLCLPFY 85


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 413 SGHFQTLYKFLYLPYF 366
           S HF  + +FL LP++
Sbjct: 26  SAHFSFMSRFLCLPFY 41


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 495 IHQPTSLILSRFD 457
           IHQP+S + S FD
Sbjct: 276 IHQPSSEVYSMFD 288


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 495 IHQPTSLILSRFD 457
           IHQP+S + S FD
Sbjct: 276 IHQPSSEVYSMFD 288


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 582 YSFESVLTXELRQSTERRFT 523
           YS+ +++   +R S E+R T
Sbjct: 86  YSYNALIMMAIRNSPEKRLT 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,625
Number of Sequences: 336
Number of extensions: 2901
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)