Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0303.Seq
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1085 - 23851852-23853165                                        103   8e-23
03_05_0830 + 28034179-28035492                                        103   1e-22
01_07_0127 + 41234826-41236136                                         99   2e-21
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336...    30   1.3  
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907           28   5.1  
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076...    28   6.7  
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747...    28   6.7  

>07_03_1085 - 23851852-23853165
          Length = 437

 Score =  103 bits (248), Expect = 8e-23
 Identities = 57/94 (60%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = +3

Query: 333 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS- 509
           MS+    DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML DE+GTAS 
Sbjct: 1   MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDEYGTASN 60

Query: 510 ISSHV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
           I S V   S    AI  +        K  PNGLV
Sbjct: 61  IKSRVNRQS-VLAAITSAQQRLKLYNKVPPNGLV 93


>03_05_0830 + 28034179-28035492
          Length = 437

 Score =  103 bits (246), Expect = 1e-22
 Identities = 56/94 (59%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
 Frame = +3

Query: 333 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS- 509
           MS+    D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTAS 
Sbjct: 1   MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60

Query: 510 ISSHV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
           I S V   S    AI  +        K  PNGLV
Sbjct: 61  IKSRVNRQS-VLAAITSAQQRLKLYNKVPPNGLV 93


>01_07_0127 + 41234826-41236136
          Length = 436

 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 52/94 (55%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
 Frame = +3

Query: 333 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS- 509
           M++    D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTAS 
Sbjct: 1   MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60

Query: 510 ISSHV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
           I S V   S    AI  +        +  PNGLV
Sbjct: 61  IKSRVNRQS-VLAAITSAQQRLKLYNRVPPNGLV 93


>01_01_0453 -
           3361460-3361549,3361660-3361846,3362038-3362139,
           3362239-3362306,3362976-3363175,3363253-3363595,
           3363837-3363893,3364011-3364727,3364805-3365007,
           3365171-3365297
          Length = 697

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 282 YTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 404
           Y  +  ++N L+KK  +M E+   D + EI  +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386


>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
          Length = 159

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 354 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 491
           +R++E+W+I K ++    A+   TS ISL+     +++RVS    D
Sbjct: 93  ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVD 134


>12_02_0966 -
           24906361-24906958,24907084-24907250,24907403-24907650,
           24907824-24908001,24908196-24908372,24908459-24908563,
           24908633-24908770,24909757-24910836
          Length = 896

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 258 CKDIILVIYTNIVFVVN*LNKKRNKMSEESSADR 359
           C+D+ L+I +NI   +  L + R +  EE+ ADR
Sbjct: 515 CEDLRLIIQSNIYNYLGILLEGRERFEEEAIADR 548


>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
            7472855-7473019,7473689-7474821,7474902-7475426,
            7477077-7477249,7478737-7478831,7478893-7481688
          Length = 1693

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +3

Query: 366  EIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 491
            E+ +++KL+ S+E+  GNG  M++     +D +S V+  L D
Sbjct: 1125 EVKELEKLVDSIEVDIGNGGKMMA---SDEDPVSEVNSKLRD 1163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,689
Number of Sequences: 37544
Number of extensions: 294924
Number of successful extensions: 691
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)