Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0303.Seq
         (612 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)              110   1e-24
SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)           29   3.9  
SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0)                28   6.9  
SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1164

 Score =  110 bits (264), Expect = 1e-24
 Identities = 63/89 (70%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
 Frame = +3

Query: 348  SADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-ISSHV 524
            +ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTAS I S V
Sbjct: 784  AADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRV 843

Query: 525  *IVSQCFGAILXSXPTQSCILKXHPNGLV 611
              +S    AI           K  PNGLV
Sbjct: 844  NRLS-VLSAITSVQQRLKLYSKVPPNGLV 871


>SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKD 458
           +ES+AD   E W+I+KL+K L+   GN T+ I  +   +D
Sbjct: 150 QESNADLPSEYWQIQKLVKYLK--GGNQTATIIALCAMRD 187


>SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)
          Length = 500

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +3

Query: 312 LNKKRNKMSEESSADRNVEIWKIKKLI 392
           L +K++ MSE S+ DR+VE W++K +I
Sbjct: 107 LKRKKDVMSE-SAIDRSVEEWELKNVI 132


>SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0)
          Length = 816

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 96  KKKSPSNRRRKCKLESVIGVARCLVRPVQTRLGQFE 203
           KKK+   R+  C    ++ +  C  RP+ +R+ ++E
Sbjct: 720 KKKTNVERKNICVNHDIVYIVICSGRPIDSRINKYE 755


>SB_53506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -1

Query: 102 SSCAGILGFFLISVTPKHVEHKIQTLQE*KMT 7
           ++ AG++ +FL+SV  +  EHK+   Q  K+T
Sbjct: 103 ATLAGVIIWFLVSVVNQSEEHKLAIRQNAKIT 134


>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2208

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 264 DIILVIYTNIVFVVN*LNKKRNKMSEESSADRNVEI 371
           D+  V   N+VFV   L + R  +S +  AD++V +
Sbjct: 302 DLPTVHLDNVVFVTEDLEESRKPLSNDDQADKSVAV 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,337,358
Number of Sequences: 59808
Number of extensions: 354278
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)