Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0303.Seq
         (612 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X81625-1|CAA57281.1|  437|Homo sapiens C11 protein protein.           114   3e-25
U90176-1|AAB49726.1|  437|Homo sapiens eukaryotic release factor...   114   3e-25
BC088358-1|AAH88358.1|  437|Homo sapiens eukaryotic translation ...   114   3e-25
AF095901-1|AAD43966.1|  437|Homo sapiens eRF1 protein.                114   3e-25
M75715-1|AAA36665.1|  428|Homo sapiens TB3-1 protein.                 112   8e-25
BT007374-1|AAP36038.1|  404|Homo sapiens eukaryotic translation ...    62   2e-09
BC014269-1|AAH14269.1|  404|Homo sapiens ETF1 protein protein.         62   2e-09
AL390866-5|CAI12711.1| 1044|Homo sapiens novel protein protein.        29   9.8  
AL355372-1|CAI16402.1| 1044|Homo sapiens novel protein protein.        29   9.8  

>X81625-1|CAA57281.1|  437|Homo sapiens C11 protein protein.
          Length = 437

 Score =  114 bits (274), Expect = 3e-25
 Identities = 65/92 (70%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-IS 515
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTAS I 
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 516 SHV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
           S V  +S   GAI           K  PNGLV
Sbjct: 64  SRVNRLS-VLGAITSVQQRLKLYNKVPPNGLV 94


>U90176-1|AAB49726.1|  437|Homo sapiens eukaryotic release factor 1
           protein.
          Length = 437

 Score =  114 bits (274), Expect = 3e-25
 Identities = 65/92 (70%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-IS 515
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTAS I 
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 516 SHV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
           S V  +S   GAI           K  PNGLV
Sbjct: 64  SRVNRLS-VLGAITSVQQRLKLYNKVPPNGLV 94


>BC088358-1|AAH88358.1|  437|Homo sapiens eukaryotic translation
           termination factor 1 protein.
          Length = 437

 Score =  114 bits (274), Expect = 3e-25
 Identities = 65/92 (70%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-IS 515
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTAS I 
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 516 SHV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
           S V  +S   GAI           K  PNGLV
Sbjct: 64  SRVNRLS-VLGAITSVQQRLKLYNKVPPNGLV 94


>AF095901-1|AAD43966.1|  437|Homo sapiens eRF1 protein.
          Length = 437

 Score =  114 bits (274), Expect = 3e-25
 Identities = 65/92 (70%), Positives = 69/92 (75%), Gaps = 1/92 (1%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-IS 515
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTAS I 
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 516 SHV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
           S V  +S   GAI           K  PNGLV
Sbjct: 64  SRVNRLS-VLGAITSVQQRLKLYNKVPPNGLV 94


>M75715-1|AAA36665.1|  428|Homo sapiens TB3-1 protein.
          Length = 428

 Score =  112 bits (270), Expect = 8e-25
 Identities = 64/91 (70%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-IS 515
           + S+ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTAS I 
Sbjct: 4   DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK 63

Query: 516 SHV*IVSQCFGAILXSXPTQSCILKXHPNGL 608
           S V  +S   GAI           K  PNGL
Sbjct: 64  SRVNRLS-VLGAITSVQQRLKLYNKVPPNGL 93


>BT007374-1|AAP36038.1|  404|Homo sapiens eukaryotic translation
           termination factor 1 protein.
          Length = 404

 Score = 61.7 bits (143), Expect = 2e-09
 Identities = 39/62 (62%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +3

Query: 429 MISLIIPPKDQISRVSKMLADEFGTAS-ISSHV*IVSQCFGAILXSXPTQSCILKXHPNG 605
           MISLIIPPKDQISRV+KMLADEFGTAS I S V  +S   GAI           K  PNG
Sbjct: 1   MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLS-VLGAITSVQQRLKLYNKVPPNG 59

Query: 606 LV 611
           LV
Sbjct: 60  LV 61


>BC014269-1|AAH14269.1|  404|Homo sapiens ETF1 protein protein.
          Length = 404

 Score = 61.7 bits (143), Expect = 2e-09
 Identities = 39/62 (62%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
 Frame = +3

Query: 429 MISLIIPPKDQISRVSKMLADEFGTAS-ISSHV*IVSQCFGAILXSXPTQSCILKXHPNG 605
           MISLIIPPKDQISRV+KMLADEFGTAS I S V  +S   GAI           K  PNG
Sbjct: 1   MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLS-VLGAITSVQQRLKLYNKVPPNG 59

Query: 606 LV 611
           LV
Sbjct: 60  LV 61


>AL390866-5|CAI12711.1| 1044|Homo sapiens novel protein protein.
          Length = 1044

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKD 458
           +E+SAD   E W+I+KL+K L+   GN T+ +  +   +D
Sbjct: 441 QEASADLPSEYWQIQKLVKYLK--GGNQTATVIALCSMRD 478


>AL355372-1|CAI16402.1| 1044|Homo sapiens novel protein protein.
          Length = 1044

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 339 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKD 458
           +E+SAD   E W+I+KL+K L+   GN T+ +  +   +D
Sbjct: 441 QEASADLPSEYWQIQKLVKYLK--GGNQTATVIALCSMRD 478


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,567,750
Number of Sequences: 237096
Number of extensions: 1615927
Number of successful extensions: 3022
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3015
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)