Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0303.Seq
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   105   3e-23
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    31   0.49 
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    31   0.49 
AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    29   2.6  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   4.6  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   4.6  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  105 bits (251), Expect = 3e-23
 Identities = 56/91 (61%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
 Frame = +3

Query: 342 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-ISS 518
           + +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA+E+GTAS I S
Sbjct: 13  DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKS 72

Query: 519 HV*IVSQCFGAILXSXPTQSCILKXHPNGLV 611
            V  +S   GAI           K  PNGLV
Sbjct: 73  RVNRLS-VLGAITSVQGRLKLYNKVPPNGLV 102


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 375 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 485
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +3

Query: 375 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 485
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AL031628-1|CAA20973.1|  416|Caenorhabditis elegans Hypothetical
           protein Y102A5D.1 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -2

Query: 269 NVFAQTKTLNKRILWKGSPNSSFKLP*SSLNRTDET 162
           N F QT+    R  WK S      LP  + NR+DET
Sbjct: 288 NSFDQTRRKEYRSRWKKSNTGGCHLPLRTWNRSDET 323


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 144 HFLVYIYVCGCSDFSSCAGILGFFLI 67
           HFL+      CS+ ++C  I+ FF++
Sbjct: 79  HFLIVYLALPCSNIAACRSIIAFFIV 104


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +3

Query: 315 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLI 443
           NKKR++ S+++   +N EI  +KK + SL  ++    +M S I
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKI 166


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 371 MEDKETYKEFGNGQRKWNIDDIPDHST*GSNLESIKDVG 487
           M DK T +  GN    ++ + +        N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 46  HMLRGNRNKKKSKNPRTRRKVRAT 117
           H ++GN  KK++K+ +TR+K R++
Sbjct: 84  HEVQGNVTKKRTKHSKTRQKARSS 107


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +1

Query: 46  HMLRGNRNKKKSKNPRTRRKVRAT 117
           H ++GN  KK++K+ +TR+K R++
Sbjct: 192 HEVQGNVTKKRTKHSKTRQKARSS 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,869,937
Number of Sequences: 27780
Number of extensions: 277435
Number of successful extensions: 697
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)