Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0303.Seq
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   7.2  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   7.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.5  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -3

Query: 85 SWIFSYFGYP*ACGTQNSDITGIKDDV 5
          +W  +    P  C T+N D T I  D+
Sbjct: 13 TWELNATNSPHTCRTKNGDYTKIMPDI 39


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 249 FGLCKDIILVIYTNIVFVVN*LNKKRNK 332
           FG  KD+ILV  +   FV +   K +N+
Sbjct: 43  FGTTKDLILVKKSTAHFVKDIYEKYKNE 70


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 356 IGRRFFRHFVSLFI*LINHKHYICINN*NNVF 261
           +G++   HF  L   LI  K +  +N  NN+F
Sbjct: 239 VGKKI-THFFDLVRPLIAFKFHSILNRTNNIF 269


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +1

Query: 40  VFHMLRGNRNKKKSKNPRTRRKVRATADVNVN 135
           ++H+LRGN N    K    R      + +  N
Sbjct: 621 LYHVLRGNENIYSGKLISMRHLKEEVSSIETN 652


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,654
Number of Sequences: 438
Number of extensions: 3366
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)