Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0302.Seq
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    24   0.85 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.5  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.0  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   7.9  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.9  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.9  

>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 111 AGFLGSTATRTTGDTLNFITFMLWAFLKVVMVPVLTK 1
           +GF     T    D  N++TF    F+ V++  +L K
Sbjct: 32  SGFENFVKTYLVSDFENYVTFFCSLFIVVILKLILAK 68


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -1

Query: 264  SMVPSRSLRQISRWSSPAPA-TMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTA 88
            S+ P  S RQ +   + +P     SP SS    T  S    R +P  SLG  +    S +
Sbjct: 912  SVSPLTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDR-KPGGSLGALSSMFDSLS 970

Query: 87   TRTTGDTL 64
               TGD L
Sbjct: 971  GNNTGDAL 978


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +2

Query: 110 ADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAG 211
           AD  KLV GL    +S  +    N + G  IVAG
Sbjct: 255 ADPGKLVLGLGVYGRSFTLASASNNKLGAPIVAG 288



 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -1

Query: 549 GCWAGTLGAKAPIFGASV 496
           G W    G  AP++ +S+
Sbjct: 215 GSWESVTGQNAPLYASSI 232


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 554 HQDVGPVPSGXKHQSSGLR 498
           HQD    PSG   Q  GLR
Sbjct: 156 HQDSRTSPSGQHLQELGLR 174


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 554 HQDVGPVPSGXKHQSSGLR 498
           HQD    PSG   Q  GLR
Sbjct: 156 HQDSRTSPSGQHLQELGLR 174


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 74  PVVRVAVEPKNPADLPKLV 130
           PV+R+ V   NP D   L+
Sbjct: 480 PVMRICVSAWNPKDCDPLI 498


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 554 HQDVGPVPSGXKHQSSGLR 498
           HQD    PSG   Q  GLR
Sbjct: 156 HQDSRTSPSGQHLQELGLR 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,641
Number of Sequences: 336
Number of extensions: 3077
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)