Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0302.Seq
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 159 2e-39
04_01_0103 + 1082077-1082167,1083037-1085477 151 4e-37
02_04_0017 + 18937774-18937864,18938505-18940945 151 5e-37
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 134 4e-32
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 98 5e-21
03_05_0511 + 25056018-25059107 94 9e-20
02_04_0148 - 20198407-20201424 91 6e-19
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 56 3e-08
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 42 3e-04
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 32 0.40
12_02_0788 - 23152810-23152975,23153618-23153862,23154529-23154723 29 2.2
11_03_0135 - 10547460-10547558,10547926-10548086,10548183-105483... 29 3.8
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215... 29 3.8
04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376 28 5.0
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 28 6.6
04_03_0901 + 20699814-20701169 28 6.6
03_02_0044 - 5245204-5245538,5245946-5246093,5246182-5247395,524... 28 6.6
08_02_1327 - 26165045-26165116,26165368-26165375,26166696-26167056 27 8.7
05_04_0281 + 19779156-19779805,19781303-19781475,19781909-197821... 27 8.7
03_05_0985 - 29424698-29425183 27 8.7
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 159 bits (385), Expect = 2e-39
Identities = 95/203 (46%), Positives = 121/203 (59%), Gaps = 6/203 (2%)
Frame = +2
Query: 2 LVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 175
+ K T+T K +A +K MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 457 ITKNATLTNEKEVDACPIKAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 516
Query: 176 INEESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTV---RP*LRNRTSSVSQ 346
EESGEHI+AGAGELHLEICLKDL+ + +T+S V L +V
Sbjct: 517 TVEESGEHIIAGAGELHLEICLKDLQEDFMG--GAEITVSPPVVSFRETVLEKSCRTVMS 574
Query: 347 SRPTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXA 526
P +PM +GLPE IDEGR+ PRDD K ++ L+E++ + A KI
Sbjct: 575 KSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFG 634
Query: 527 PRVPAQH-PGGLLKGVQSLMKLR 592
P + + KGVQ L +++
Sbjct: 635 PETTGPNIVVDMCKGVQYLNEIK 657
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 151 bits (366), Expect = 4e-37
Identities = 89/201 (44%), Positives = 118/201 (58%), Gaps = 4/201 (1%)
Frame = +2
Query: 2 LVKTGTITTFKNAHN--MKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 175
+ K T+T K A ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 461 ITKNATLTNEKEADACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 520
Query: 176 INEESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTVR-P*LRNRTSSVSQSR 352
EESGEHI+AGAGELHLEICLKDL+ + ++ + R L +V
Sbjct: 521 TIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFRETVLEKSCRTVMSKS 580
Query: 353 PTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXAPR 532
P +P+ +GL E ID+GR+ PRDD K ++ L+E++ + A KI P
Sbjct: 581 PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPE 640
Query: 533 VPAQH-PGGLLKGVQSLMKLR 592
+ + KGVQ L +++
Sbjct: 641 TTGPNMVVDMCKGVQYLNEIK 661
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 151 bits (365), Expect = 5e-37
Identities = 89/201 (44%), Positives = 119/201 (59%), Gaps = 4/201 (1%)
Frame = +2
Query: 2 LVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 175
+ K T+T K +A ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 461 ITKNATLTNEKESDACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 520
Query: 176 INEESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTVR-P*LRNRTSSVSQSR 352
EESGEHI+AGAGELHLEICLKDL+ + ++ + R L +V
Sbjct: 521 TIEESGEHIIAGAGELHLEICLKDLQEDFMGGAEIIVSPPVVSFRETVLEKSCRTVMSKS 580
Query: 353 PTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXAPR 532
P +P+ +GL E ID+GR+ PRDD K ++ L+E++ + A KI P
Sbjct: 581 PNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPE 640
Query: 533 VPAQH-PGGLLKGVQSLMKLR 592
+ + KGVQ L +++
Sbjct: 641 TTGPNMVVDMCKGVQYLNEIK 661
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 134 bits (325), Expect = 4e-32
Identities = 85/213 (39%), Positives = 122/213 (57%), Gaps = 16/213 (7%)
Frame = +2
Query: 2 LVKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 175
+ K T+T K +AH +K MKFSVSPVVR +V KN ++LPKLVEGLKRLAKSDP+V C
Sbjct: 463 ITKNATLTDEKAVDAHPIKAMKFSVSPVVRKSVACKNASELPKLVEGLKRLAKSDPLVVC 522
Query: 176 INEESGEHIVAGAGELHLEICLKDLE------------GTMLAFQSRSLTLSCRTVRP*L 319
EESGEH++AG G+LHLEIC+KDL+ ++ ++ SCRTV
Sbjct: 523 TIEESGEHVIAGVGQLHLEICIKDLQEDFMGGAEIIVGPPIITYRETVTKNSCRTVMSKS 582
Query: 320 RNRTSSV-SQSRPTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXV 496
N+ + + ++RP L+ L + ID+ R+ P+DD K + L+E++ +
Sbjct: 583 PNKHNRLYMEARPLDKE----DLQQDEPSLCKAIDDERIGPKDDIKERGKILSEEFGWDK 638
Query: 497 TEAPKIGAXAPRVPAQH-PGGLLKGVQSLMKLR 592
A KI A P + + KGVQ L +++
Sbjct: 639 DLAKKIWAFGPETKGPNLLVDMCKGVQYLSEIK 671
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 97.9 bits (233), Expect = 5e-21
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 6/199 (3%)
Frame = +2
Query: 2 LVKTGTITTFK---NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 172
++KT TI K + + + ++F+ PVV++A EP NP++LPK+VEGL++++KS P+
Sbjct: 583 IMKTATICPMKMDEDVYIFRPLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAV 642
Query: 173 CINEESGEHIVAGAGELHLEICLKDLEGTMLAFQSR---SLTLSCRTVRP*LRNRTSSVS 343
EESGEH + G GEL+L+ +KDL + + + C TV + + +
Sbjct: 643 TKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAET 702
Query: 344 QSRPTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAX 523
++ T+ + +P+ GL EDI+ G V+ K + ++Y++ V A I A
Sbjct: 703 PNKRNKITMVA---EPLEKGLAEDIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAF 759
Query: 524 APRVPAQHPGGLLKGVQSL 580
P Q P LL S+
Sbjct: 760 GPE--KQGPNILLDDTLSV 776
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 93.9 bits (223), Expect = 9e-20
Identities = 42/84 (50%), Positives = 60/84 (71%)
Frame = +2
Query: 2 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 181
++K+ T+++ KN M F VSP+++VA+EP NPADL LV+GLK L ++DP V+
Sbjct: 512 ILKSATLSSTKNCWPFSSMMFQVSPMLKVAIEPSNPADLGALVKGLKLLNRADPFVEYTV 571
Query: 182 EESGEHIVAGAGELHLEICLKDLE 253
+ GEH++A AGE+HLE C KDLE
Sbjct: 572 SQRGEHVLAAAGEIHLERCKKDLE 595
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 91.1 bits (216), Expect = 6e-19
Identities = 39/84 (46%), Positives = 60/84 (71%)
Frame = +2
Query: 2 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 181
++K T+++ KN M F VSP+++VA+EP NP+DL LV+GLK L ++DP ++
Sbjct: 492 VLKNATLSSTKNCQPFSGMMFQVSPMLKVAIEPSNPSDLGALVKGLKLLNQADPFIEYTV 551
Query: 182 EESGEHIVAGAGELHLEICLKDLE 253
E GEH++A AGE+HLE C+K+L+
Sbjct: 552 SERGEHVLAAAGEIHLEHCIKNLQ 575
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +2
Query: 74 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESGEHIVAGAGELHLEICLKDL 250
PV++VA+EPK AD K+ GL +LA+ DP +EE+ + ++ G GELHL+I + L
Sbjct: 457 PVIKVAIEPKTKADADKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRL 516
Query: 251 E 253
+
Sbjct: 517 K 517
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 235
PV+ +AV P + + + L R K DP + ++ ESGE I++G GELHL+I
Sbjct: 477 PVMSLAVSPISKDSGGQFSKALNRFQKEDPTFRVGLDPESGETIISGMGELHLDI 531
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -1
Query: 216 PAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTT 76
P+P+ D S C GS + + P+T+ AG S T +T
Sbjct: 342 PSPSEAIGTDGSSTSCGTGSSVTNAIAPATTTSTFAGLFASVTTSST 388
>12_02_0788 - 23152810-23152975,23153618-23153862,23154529-23154723
Length = 201
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 338 QSWSDSSATVSRYDTTGSDFL-IGMQAWSPQDP 243
++W DSS V Y T G + + IG W Q P
Sbjct: 113 RAWGDSSRVVYSYTTMGKEVVPIGWDGWEVQKP 145
>11_03_0135 -
10547460-10547558,10547926-10548086,10548183-10548306,
10548566-10548729,10549803-10549883,10549973-10550097,
10550200-10550430,10550566-10550588,10551055-10551539,
10551678-10552075,10552903-10552988,10553120-10553397,
10553494-10553714,10553927-10554018,10554148-10554213,
10555855-10556022
Length = 933
Score = 28.7 bits (61), Expect = 3.8
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -1
Query: 330 VRFLSYGLTVRHDRVRLLDWNASMVPSRSLRQISRWSS-PAPATMCSPDSSLIHCTMGSD 154
V +S G V+ V D N S + S+S ++ + P+ T + C GS+
Sbjct: 149 VSTISVGSKVKAANVSSKDLNVSNISSKSTKEDAEEGIVPSGCTSTGKEEDGRSCIGGSE 208
Query: 153 LARRLRPSTSLGRSAGF 103
A + TS GR+ F
Sbjct: 209 AANKNEEQTSSGRNDDF 225
>01_06_0230 +
27718840-27720188,27720983-27721174,27721488-27721569,
27721651-27721839,27721964-27722077,27722470-27722560,
27722632-27722789,27723401-27723826,27724355-27724727,
27725075-27725238
Length = 1045
Score = 28.7 bits (61), Expect = 3.8
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Frame = +2
Query: 92 VEPKNPADLPKLVEGLKRLAKSDPMVQC------INEESGEHIVAGAGELHLEICLKDLE 253
VE K P D+ K G R K D VQ I+E+ G + L++ +KD
Sbjct: 187 VEKKKPGDVEKR-RG--RQGKVDEYVQRRIVRGEISEDEGNVDKNERKQFTLQLKMKDTR 243
Query: 254 GTMLAFQS-RSLTLSCRTVRP*LRNRTSSVSQ-SRPTSTTV 370
G+M+A QS R++ + + R TS VS S P+++ +
Sbjct: 244 GSMVAHQSERNMHVQSNARKGLQRQSTSMVSHISSPSNSRI 284
>04_04_1081 - 30700791-30700904,30701011-30703053,30703126-30704376
Length = 1135
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/71 (23%), Positives = 30/71 (42%)
Frame = -1
Query: 234 ISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFI 55
++ W+ PAP T+ P++S + ++ SL G T T GD L ++
Sbjct: 1040 VAEWT-PAPETVSIPEASTDPSQLPHTAHWVMQFDGSLSLQGAGAGVTLTSPNGDVLRYL 1098
Query: 54 TFMLWAFLKVV 22
W+ + V
Sbjct: 1099 ATPSWSLTRSV 1109
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/52 (38%), Positives = 29/52 (55%)
Frame = -1
Query: 264 SMVPSRSLRQISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSA 109
S V S +L++ ++S P+ MCS +S HCT D R+RP +L R A
Sbjct: 514 STVVSMALKR-EQFSIPS---MCS-ESFSSHCTKSQDSVVRMRPDDTLVRRA 560
>04_03_0901 + 20699814-20701169
Length = 451
Score = 27.9 bits (59), Expect = 6.6
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 6/63 (9%)
Frame = -1
Query: 270 NASMVPSRSLRQ-ISRWSSPAPATMCSPDSSLIHCTMGSDLARRLR-----PSTSLGRSA 109
+ +VP+ +LR IS WSS +PAT S D+S+ G L R++ PS +L + A
Sbjct: 87 STDLVPNLTLRSLISHWSSSSPAT--SGDASVTSSPAG--LVRQVASPDADPSAALRQLA 142
Query: 108 GFL 100
+L
Sbjct: 143 AYL 145
>03_02_0044 -
5245204-5245538,5245946-5246093,5246182-5247395,
5247730-5248003,5248141-5248293
Length = 707
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -2
Query: 347 FERQSWSDSSATVSRYDTTGSDFLIGMQAWSPQDP*D-RSQDGVLQHQR 204
FE S S Y TGS IG + +P D + R+ G L+HQR
Sbjct: 16 FEEMPRSPESLATRDYSATGSSSRIGNRESTPDDNQEARALLGRLEHQR 64
>08_02_1327 - 26165045-26165116,26165368-26165375,26166696-26167056
Length = 146
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 422 HQCPLADHQAWA*AFMNRRLCLLGDFERQSWSDS 321
H+CP + W+ A +R+LC+ G SW+ +
Sbjct: 20 HRCPYQEKIGWSPASAHRQLCIAG--RPPSWAST 51
>05_04_0281 +
19779156-19779805,19781303-19781475,19781909-19782162,
19782265-19782339,19782431-19782538,19782914-19783031,
19783347-19783482,19785623-19785797,19786333-19786860,
19787624-19787836,19787850-19787882
Length = 820
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 285 RLLDWNASMVPSRSLRQISRWSSPAPATM 199
+L DWN + P R QI W S P +
Sbjct: 368 KLYDWNPAEFPRRLRHQIFEWLSSMPVEL 396
>03_05_0985 - 29424698-29425183
Length = 161
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 410 EDIDEGRVNPRDDFKTCARYLTEKY 484
ED D G ++PR D K R+L KY
Sbjct: 8 EDEDLGIIDPRSDDKALKRHLLRKY 32
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,232,584
Number of Sequences: 37544
Number of extensions: 365859
Number of successful extensions: 1029
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1015
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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