Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0302.Seq
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   192   1e-49
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   6e-19
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.058
SB_46120| Best HMM Match : Transformer (HMM E-Value=3.2)               32   0.41 
SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.71 
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 30   1.2  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 30   1.6  
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.6  
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.2  
SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     29   2.9  
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)                   28   5.0  
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   5.0  
SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  27   8.8  
SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)                27   8.8  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  192 bits (469), Expect = 1e-49
 Identities = 107/200 (53%), Positives = 134/200 (67%), Gaps = 3/200 (1%)
 Frame = +2

Query: 2    LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 181
            LVKTGTI+T+++ HNMK+MKFSVSPVVRVAVEPKNPADLPKLVEGL RLAKSDPMVQ   
Sbjct: 453  LVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKNPADLPKLVEGLNRLAKSDPMVQSFT 512

Query: 182  EESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTVRP*LRNRTSSVSQSR-PT 358
            EESGEHIVAGAGELHLEICLKDLE        +  +    + R  + ++++ +  S+ P 
Sbjct: 513  EESGEHIVAGAGELHLEICLKDLEEDHACIPLKK-SEPVVSYRECVSDKSNQMCLSKSPN 571

Query: 359  STTVYS*RLKPMPDGLPEDIDEG-RVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXAPRV 535
                      P+ + LPEDID+G  +NPR DFK  ARYL + Y + V EA KI +  P  
Sbjct: 572  KHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEG 631

Query: 536  PAQH-PGGLLKGVQSLMKLR 592
               +    + KGVQ L +++
Sbjct: 632  TGPNLLVDVSKGVQYLNEIK 651


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 54/182 (29%), Positives = 96/182 (52%), Gaps = 6/182 (3%)
 Frame = +2

Query: 2   LVKTGTITTFKN---AHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 172
           +VKT TIT  +    A+  + +KF+    +++AVEP NP++LPK+++GL+++ KS P++ 
Sbjct: 427 IVKTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSELPKMLDGLRKVNKSYPLLT 486

Query: 173 CINEESGEHIVAGAGELHLEICLKDLEGTMLAFQSR---SLTLSCRTVRP*LRNRTSSVS 343
              EESGEH++ G GEL+L+  + DL         +    +   C TV      +  + +
Sbjct: 487 TKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCETVVETSSLKCFAET 546

Query: 344 QSRPTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAX 523
            ++    T+ +   +P+  GL EDI+  +V    + K    +   KY++ +  A  I A 
Sbjct: 547 PNKKNKVTMIA---EPLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIWAF 603

Query: 524 AP 529
            P
Sbjct: 604 GP 605


>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +2

Query: 113 DLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 235
           DL +  + + R  + DP  +   ++ES E I++G GELHL++
Sbjct: 36  DLDQFSKAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77


>SB_46120| Best HMM Match : Transformer (HMM E-Value=3.2)
          Length = 436

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 366 VVLVGRL*ETELVRFLSYGLTVRHDRVRLLDWNASMVPSRSLRQI 232
           +V+VG   E +L  F  +    R +R  LLD+N  + P R LRQ+
Sbjct: 337 IVIVGDNVEAKLKYFTDWNFKTRSNRTTLLDFNQHL-PCRQLRQV 380


>SB_5128| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2102

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
 Frame = +2

Query: 74   PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIV----AGAGELHLEICL 241
            P  +   EPK P   P +++ L  + K DP    +   S + ++    A  G+L  +   
Sbjct: 1454 PKAKEEEEPKKPVRDPSIIDKLTLVKKVDPSDATLYVSSDDQVIYALDAKTGDLMWKYGT 1513

Query: 242  KDLEGTMLAFQSRSLTLSCRT 304
             +  G+M AF      L C T
Sbjct: 1514 AEDGGSMCAFSPDETVLYCGT 1534


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 194 EHIVAGAGELHLEICLKDLE 253
           EH++  AGE+HL+ C+ DL+
Sbjct: 2   EHVIIAAGEVHLQRCVDDLK 21



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 259 HACIPIKKSDPVVSYRETV 315
           +AC+ +  SDP++ +RETV
Sbjct: 24  YACVELNVSDPIIPFRETV 42


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -1

Query: 177  IHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTTGD 70
            I C MG D   RLR ST L R   F+GS     T D
Sbjct: 1062 IECNMGFDAVMRLRTSTGL-RPVDFVGSFYMSNTTD 1096


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
 Frame = +2

Query: 353 PTSTTVYS*RLKPMPDGLPEDIDEGR----VNPR 442
           PT T +    L P+PDG+ E+IDEG+    +NPR
Sbjct: 711 PTPTRIRL--LSPVPDGIYEEIDEGQIYDIINPR 742


>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 389

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +2

Query: 317 LRNRTSSVSQSRPTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEK 481
           L+N+T  VS +RP+ST + +  L     GLP+D+ E  V     FK   + +T K
Sbjct: 93  LQNKTLKVSFARPSSTEIKNANL--YISGLPKDMKEEEVEAL--FKPFGKIITSK 143


>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4277

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 159  SDLARRLRPSTSLGRSAGFLGSTATRTTGDTLNFITFMLWAFLKV 25
            S+  RR +P T  GR+  FLG+ + R T    NF+ F+   F+++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733


>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 383 LKPMPDGLPEDIDEGRVNPRDDFKTCARYLTE 478
           L+ M +  PED  +GR   R + K C R++ E
Sbjct: 22  LQTMEENSPEDAQDGRFTLRTEVKNCIRHVYE 53


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 161 PMVQCINEESGEHIVAGAGELHLEICLKDL 250
           P  Q + E   EH+VA +G+L  E C K L
Sbjct: 26  PTWQRVKEFQNEHLVAQSGKLRFEACKKTL 55


>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
          Length = 165

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 122 KLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 244
           ++V+ L   A  DP  + +N  S  H  A  G+LH   CLK
Sbjct: 119 EVVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156


>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1507

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 236  CLKDLEGTMLAFQSRSLTLSCRTVRP*L--RNRTSSVSQSRPTSTTV 370
            C    + T+    SR +TLSC+T R  +  RN +S V+ +R TS  V
Sbjct: 1275 CNTSRDVTLSCNTSRDVTLSCKTSRGVILARNTSSGVTLTRNTSRGV 1321


>SB_44879| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 315 YGLTVRHDRVRLLDWNASMVPSRSLRQISRWSSPA 211
           YG+  +  R++   W+A +  SRSLRQ  R  + A
Sbjct: 274 YGILPKQFRLQYRKWSAELFRSRSLRQSMRRENTA 308


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 274 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQAH 393
           I+K+     Y+E + +E++ L   +  N+H+ +   AQ H
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYH 255


>SB_49427| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1958

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +1

Query: 295  VSYRETVAEESDQ-LCLSKSPNKHNRLFMKAQAHA*WSARGH**GSRESPR 444
            V YR  + EE +   CL +    H+R+F+       W   GH   S + PR
Sbjct: 921  VLYRRRIVEEGESWCCLRRKEGLHSRVFIMIVGI--WGGTGHWTWSLDPPR 969


>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 457 LRSVSYRKVRIXCYRSPEDWCFXPEGT 537
           LRS SYR  R  CY+ P +    P  T
Sbjct: 641 LRSTSYRVKRTECYKVPSEVAHRPSTT 667


>SB_51151| Best HMM Match : Vicilin_N (HMM E-Value=0.19)
          Length = 493

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -1

Query: 297 HDRVRLLDWNASMVPSRSLRQISRWSSPAPATMCSPDSSLIHCTMGSD 154
           H R R      S+   +S  +++R + PAP   C      + C +G+D
Sbjct: 349 HSRSREERRKKSIEKRKSQEKMNRRAKPAPGLHCEKPYEPVRCVVGND 396


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,486,300
Number of Sequences: 59808
Number of extensions: 415170
Number of successful extensions: 1125
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)