Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0302.Seq
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    26   0.81 
DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.            23   7.5  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 26.2 bits (55), Expect = 0.81
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 334 AGPIPQLRSHGTTRQGQTS*LECKHG 257
           AGPIP  + H   +Q Q S L  KHG
Sbjct: 244 AGPIPSQQKHQQHQQQQQSVLLPKHG 269



 Score = 22.6 bits (46), Expect = 10.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 551 QDVGPVPSGXKHQ 513
           Q  GP+PS  KHQ
Sbjct: 242 QGAGPIPSQQKHQ 254


>DQ342048-1|ABC69940.1|  847|Anopheles gambiae STIP protein.
          Length = 847

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -1

Query: 285 RLLDWNASMVPSRSLRQISRWSSPAPATMCSPDSSLI 175
           RL +W     P+R L    RW S   ++     +SL+
Sbjct: 456 RLREWKPFSEPTRHLDIFKRWKSILASSRTDTVNSLL 492


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 649,581
Number of Sequences: 2352
Number of extensions: 12863
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)