Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0302.Seq
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 209 1e-54
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 206 7e-54
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 77 1e-14
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 75 5e-14
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 50 2e-06
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 46 3e-05
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 46 3e-05
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.089
U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical pr... 29 1.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 3.3
Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical pr... 28 4.4
U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms prot... 28 5.9
AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinosit... 28 5.9
AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein. 28 5.9
AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinosit... 28 5.9
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 209 bits (510), Expect = 1e-54
Identities = 116/201 (57%), Positives = 139/201 (69%), Gaps = 4/201 (1%)
Frame = +2
Query: 2 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 181
LVK GTITT+K+AHNM+VMKFSVSPVVRVAVE KNPADLPKLVEGLKRLAKSDPMVQCI
Sbjct: 473 LVKGGTITTYKDAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIF 532
Query: 182 EESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTVRP*LRNRTSSVSQSR-PT 358
EESGEHI+AGAGELHLEICLKDLE + + + R +++ ++ + S+ P
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKK-SDPVVSYRETVQSESNQICLSKSPN 591
Query: 359 STTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXAPRVP 538
+PMPDGL +DI+ G VN RD+FK A+ L EKYEY VTEA KI P
Sbjct: 592 KHNRLHCTAQPMPDGLADDIEGGTVNARDEFKARAKILAEKYEYDVTEARKIWCFGP--D 649
Query: 539 AQHPGGLL---KGVQSLMKLR 592
P L+ KGVQ L +++
Sbjct: 650 GTGPNLLMDVTKGVQYLNEIK 670
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 206 bits (504), Expect = 7e-54
Identities = 115/201 (57%), Positives = 139/201 (69%), Gaps = 4/201 (1%)
Frame = +2
Query: 2 LVKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 181
LVK GTITT+K+AHNM+VMKFSVSPVVRVAVE KNPADLPKLVEGLKRLAKSDPMVQCI
Sbjct: 473 LVKGGTITTYKDAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIF 532
Query: 182 EESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTVRP*LRNRTSSVSQSR-PT 358
EESGEHI+AGAGELHLEICLKDLE + + + R +++ ++ + S+ P
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKK-SDPVVSYRETVQSESNQICLSKSPN 591
Query: 359 STTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXAPRVP 538
+PMPDGL +DI+ G V+ RD+FK A+Y EKYEY VTEA KI P
Sbjct: 592 KHNRLHCTAQPMPDGLADDIEGGTVSARDEFKARAKYPGEKYEYAVTEARKIWCFGP--D 649
Query: 539 AQHPGGLL---KGVQSLMKLR 592
P L+ KGVQ L +++
Sbjct: 650 GTGPNLLMDVTKGVQYLNEIK 670
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 77.0 bits (181), Expect = 1e-14
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 3/179 (1%)
Frame = +2
Query: 2 LVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 172
+VKT TI ++ + + +KF+ V++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 563 IVKTATIAELGYEEDVYIFRPLKFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLT 622
Query: 173 CINEESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTVRP*LRNRTSSVSQSR 352
EESGEH++ G GE +++ + D+ + + T
Sbjct: 623 TRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAET 682
Query: 353 PTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXAP 529
P + +P+ L EDI+ V + + + KY + + A I A P
Sbjct: 683 PNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWAFGP 741
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 74.5 bits (175), Expect = 5e-14
Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 3/176 (1%)
Frame = +2
Query: 2 LVKTGTITTF---KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 172
+VKT TI ++ + + +KF+ V++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 438 IVKTATIAELGYEEDVYIFRPLKFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLT 497
Query: 173 CINEESGEHIVAGAGELHLEICLKDLEGTMLAFQSRSLTLSCRTVRP*LRNRTSSVSQSR 352
EESGEH++ G GE +++ + D+ + + T
Sbjct: 498 TRVEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIKVADPVVTFNETVIETSTLKCFAET 557
Query: 353 PTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGA 520
P + +P+ L EDI+ V + + + KY + + A I A
Sbjct: 558 PNKKNKITMMAEPLEKQLDEDIENEVVQIGWNRRRLGEFFQTKYNWDLLAARSIWA 613
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +2
Query: 74 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 235
PV+ +A++P N D ++ L R K DP + N+E+ E IV+G GELHLEI
Sbjct: 446 PVISMAIKPVNRKDADNFIKALTRFTKEDPTFRREYNQEAKETIVSGMGELHLEI 500
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +2
Query: 47 MKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELH 226
+K+ + +VRV++ + D+ L E LK LA D ++ + E+GE + AGE+H
Sbjct: 467 LKIGSQTGEALVRVSISTQQLDDMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVH 526
Query: 227 LEICLKDL 250
L+ C+KDL
Sbjct: 527 LQKCIKDL 534
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/68 (35%), Positives = 40/68 (58%)
Frame = +2
Query: 47 MKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAGAGELH 226
+K+ + +VRV++ + D+ L E LK LA D ++ + E+GE + AGE+H
Sbjct: 467 LKIGSQTGEALVRVSISTQQLDDMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVH 526
Query: 227 LEICLKDL 250
L+ C+KDL
Sbjct: 527 LQKCIKDL 534
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 33.9 bits (74), Expect = 0.089
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +2
Query: 92 VEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKD 247
+EP + L + + L+ L + DP ++ + ++G+ IV GELHLE +KD
Sbjct: 399 IEPPSNRQLNQFNKALEELTREDPSMKIRFDRDTGQTIVETQGELHLE-AIKD 450
>U41278-3|AAK31512.1| 453|Caenorhabditis elegans Hypothetical
protein F33G12.4 protein.
Length = 453
Score = 30.3 bits (65), Expect = 1.1
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 38 AHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSD 160
A + F +P V V + NP L +L+E ++++ K +
Sbjct: 71 AQGKTTITFQTTPAVMVCISKANPEALAQLIEAIRKIVKGE 111
>Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical
protein H40L08.1 protein.
Length = 444
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 171 CTMGSDLARRLRPSTSLGRS 112
C MGS+ A+RLRP + GRS
Sbjct: 202 CVMGSEDAQRLRPDRAFGRS 221
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.7 bits (61), Expect = 3.3
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 135 PSTSLGRSAGFLGSTATRTTGDTLN 61
PSTS G AGFL STA + G N
Sbjct: 142 PSTSSGLPAGFLNSTANSSVGANNN 166
>Z49130-1|CAA88965.2| 708|Caenorhabditis elegans Hypothetical
protein T06D8.2 protein.
Length = 708
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = -1
Query: 273 WNASMVPSRSLRQISRWSSPAPATMCSPDSSLIHCTMGSDLARRLRPSTSLG 118
W + P+ QISR +P+P +P SS + T S +RR S +G
Sbjct: 352 WEVPIRPTTMNSQISRKRTPSPVVRKAPSSSSSNSTSSS--SRRRSNSIGMG 401
>U53344-5|AAA96226.2| 442|Caenorhabditis elegans More of ms protein
1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 220 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 110
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AF209707-1|AAF28335.1| 522|Caenorhabditis elegans phosphoinositide
3-kinase adaptersubunit protein.
Length = 522
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 225 WSSPAPATMCSPDSSLIHCT 166
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>AF013489-1|AAC47728.1| 442|Caenorhabditis elegans MOM-1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -3
Query: 220 FSSTSDNVFS*FFINTLHHGVRFSQTFKTFY*LGQIS 110
F+ST+ NVF F +++L HG+ F T T LG I+
Sbjct: 303 FNSTACNVFFTFAVSSLLHGLDFQMTI-TLLALGFIA 338
>AC006708-6|AAF60427.2| 522|Caenorhabditis elegans Phosphoinositide
kinase adaptersubunit protein 1 protein.
Length = 522
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 225 WSSPAPATMCSPDSSLIHCT 166
W SP+P T S DS L+H T
Sbjct: 495 WDSPSPDTPSSSDSRLVHPT 514
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +2
Query: 392 MPDGLPEDID--EGRVNPRDDFKTCARYLTEKYEYXVTEAPKIGAXAPRVPAQHPG 553
M D +D D E NP + L+ Y +T++ G +P +PA HPG
Sbjct: 16 MDDDYDDDYDDYEDEENPEKQYTYDRNSLSTNYYTYLTDS---GRNSPALPAPHPG 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,147,892
Number of Sequences: 27780
Number of extensions: 291877
Number of successful extensions: 855
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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