Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0302.Seq
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   0.99 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   3.0  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   3.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.2  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 22  HHFQECPQHEGDEIQCITSRACRC 93
           HH    P+  G +++ I   AC C
Sbjct: 464 HHHPHPPETPGPQVETILQNACFC 487


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 282 LLDWNASMVPSRSLRQISRWSS 217
           L+ WN  M P + ++   +W S
Sbjct: 430 LISWNPLMQPKQPIKLFEQWKS 451


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 329 TSSVSQSRPTSTTVYS*RLKPMPDGLPEDIDEGRVNPRDD 448
           T+ +  S P S + Y   LK  PDG  E +     N R+D
Sbjct: 384 TNEIDFSFPDSVSDYPLELKGSPDGF-ESVTSQYKNIRED 422


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 KPMPDGLPEDIDEGRVNPR 442
           KP+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 386 KPMPDGLPEDIDEGRVNPR 442
           KP+P+ L ED+   +V PR
Sbjct: 20  KPLPENLKEDLIVYQVYPR 38


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 141 NVWLNLTPWCSV 176
           N WL  T WC V
Sbjct: 110 NRWLFTTDWCDV 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,151
Number of Sequences: 438
Number of extensions: 3152
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)