Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0300.Seq
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 133 2e-32
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 30 0.29
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 29 0.39
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 28 1.2
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.3
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.3
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 8.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.3
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 133 bits (322), Expect = 2e-32
Identities = 70/102 (68%), Positives = 79/102 (77%), Gaps = 1/102 (0%)
Frame = -3
Query: 551 QAIYVPADDL-QILLRYHFCSLGCYH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEH 375
QA+YVPADDL F L LSR+I+ELGIYPAVDPLDS SR+MDP I+G EH
Sbjct: 354 QAVYVPADDLTDPAPATTFAHLDATTVLSRSISELGIYPAVDPLDSKSRMMDPRILGEEH 413
Query: 374 YNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVK 249
YN+A VQ++LQ+YKSLQDIIAILGMDELSE DKLTV RA K
Sbjct: 414 YNLAGSVQQMLQEYKSLQDIIAILGMDELSEADKLTVERARK 455
Score = 89.0 bits (211), Expect = 5e-19
Identities = 41/67 (61%), Positives = 53/67 (79%)
Frame = -2
Query: 252 KIQRFLSQPFQVAEVFTGHAGKLVPLEETIKGFSKILAGDYDHLPEVAFYMVGPIEEVVA 73
K+QRFLSQPF VAEVFTG G+LV L++TI+ F +IL G +D LPE AFYMVG I++ V
Sbjct: 455 KVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMVGSIDDAVK 514
Query: 72 KADTLAK 52
KA+ +A+
Sbjct: 515 KAEKIAQ 521
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -3
Query: 374 YNVARG-VQKILQDYKSLQDIIAILGMDELSEEDKLTV 264
+N R +++I+Q S+ +II ++G LSE DK+T+
Sbjct: 480 FNTLRDQIKQIIQQEDSMLEIIQLVGKSALSETDKVTL 517
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 29.5 bits (63), Expect = 0.39
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
+ R + IYP ++ L S SR+M I +H +V+ + + + + ++
Sbjct: 357 VDRQLHNNAIYPPINVLPSLSRLMKSAIGEGMTRNDHGDVSNQLYAMYAIGRDAASMKSV 416
Query: 305 LGMDELSEEDKLTVARAVKF 246
+G + LS+ED+L + KF
Sbjct: 417 VGEEALSQEDRLALEFLGKF 436
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 488 GCYH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQD 318
GCY+ + + + + PA + +D I + H NV R + I + Y SL +
Sbjct: 529 GCYNGSATSYPTVDLSPAQRGCQDSWNYLDHFDIASAHRNVYRNIHSIRRHYLSLSE 585
>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 255
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -1
Query: 529 MTCRSCSATTFAHLDATTDSPEPLLNWVSTQLWILLTQLPVSW-TPILLELSTTMLHVEF 353
M C T+FA +D E NWV + L+ + ++ TP L T +L +
Sbjct: 109 MLINVCVITSFASVDIYRAKDEIFANWVDMDYYEKLSYIGSAFITPALYFTLTLILFLPR 168
Query: 352 RKFF 341
R +
Sbjct: 169 RNIY 172
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -1
Query: 583 YHHQEGSITSDRLFMYQ---LMTCRSCSATTFA 494
+ E ++T D+ F+ L+ C SC+AT+F+
Sbjct: 1233 FQRYESTLTDDQCFINVSPLLLKCPSCNATSFS 1265
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = -3
Query: 431 DPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAILG 300
+ +D+T + +P I E V + Q ++ + + ++DI++ LG
Sbjct: 371 EEIDATIQTYNPQNIDLEDEAVEKEWQDLVAEEQKVEDIVSTLG 414
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.3
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = -1
Query: 529 MTCRSCSATTFAHLDATTDSPEPLLNW-VSTQLWILLTQLPVSWTPILLELSTTMLHVEF 353
+T +C+ +T +T + PL +T + T PV+ TP+ TT + +
Sbjct: 422 LTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPY 481
Query: 352 RKFFRTTNPCRT 317
T+ P T
Sbjct: 482 TSTPVTSTPLTT 493
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,781
Number of Sequences: 5004
Number of extensions: 52398
Number of successful extensions: 162
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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