Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0300.Seq
(595 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.69
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 31 0.92
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 30 1.2
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 30 1.2
06_01_0961 - 7389515-7389945,7390840-7391107,7391582-7391707 29 2.8
03_06_0672 + 35443883-35444051,35444151-35444482 29 2.8
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871... 29 2.8
03_05_1149 + 30753463-30754695,30754834-30755017,30755321-307565... 29 3.7
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 28 4.9
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 28 6.5
01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 28 6.5
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 27 8.5
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 27 8.5
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.1 bits (67), Expect = 0.69
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHY--------NVARGVQKILQDYKSLQD 318
L + +A+ +P+V+ L S S+ HY ++ +++LQ L +
Sbjct: 441 LDKKLAQRKHFPSVNWLISYSKYSKIPTALEPHYEREDPDFIDIRTKAREVLQREDDLNE 500
Query: 317 IIAILGMDELSEEDKLTVARAVKFR 243
I+ ++G D L+E DK+T+ A R
Sbjct: 501 IVQLVGKDALAESDKITLETAKLLR 525
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 30.7 bits (66), Expect = 0.92
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 353 QKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKFR 243
+++LQ L +I+ ++G D L+E DK+T+ A R
Sbjct: 500 REVLQREDDLNEIVQLVGKDALAESDKITLETAKLLR 536
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 396 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 455
Query: 305 LGMDELSEEDKLTVARAVKF 246
+G + LS ED L + KF
Sbjct: 456 VGEEALSSEDLLYLEFLDKF 475
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 473 LSRAIAELGIYPAVDPLDSTSRIMDPNI----IGAEHYNVARGVQKILQDYKSLQDIIAI 306
+ R + IYP ++ L S SR+M I +H +V+ + K +Q + A+
Sbjct: 366 IDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHSDVSNQLYANYAIGKDVQAMKAV 425
Query: 305 LGMDELSEEDKLTVARAVKF 246
+G + LS ED L + KF
Sbjct: 426 VGEEALSSEDLLYLEFLDKF 445
>06_01_0961 - 7389515-7389945,7390840-7391107,7391582-7391707
Length = 274
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 553 DRLFMYQLMTCRSCSATTFAHLDATTDSPEPLLNWVS 443
DR+ + Q+ R CS + A +TT S PLL W++
Sbjct: 115 DRIEVLQVQLRRGCSGSGEADGGSTTSSKAPLLLWLN 151
>03_06_0672 + 35443883-35444051,35444151-35444482
Length = 166
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 368 VARGVQKILQDYKSLQDIIAILGMDELSEEDK 273
VA GVQ++++ KSL I A+ +E EE++
Sbjct: 84 VATGVQRLIKGIKSLSQIFAMYDDEEEDEEER 115
>02_04_0562 -
23886272-23886357,23886456-23886571,23887045-23887127,
23887683-23887829,23887946-23887993,23888166-23888384,
23889370-23889541,23889636-23889700,23890386-23890512,
23891358-23891450,23891520-23891629,23891722-23891868,
23892161-23892473,23892580-23893178
Length = 774
Score = 29.1 bits (62), Expect = 2.8
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = -3
Query: 386 GAEHYNVARGVQKILQDYKSLQDIIAILGMDELSEEDKLTVARAVKFRG--SSHNLSK*L 213
G +HY + ++K LQD K+ +I G++ LSEE+ R G S+ + + L
Sbjct: 406 GTDHY-LRFMLRKKLQDIKNDDKMIQAEGVESLSEEELRQACRERGHLGLLSTEEMRQQL 464
Query: 212 RCSLDMRVN 186
R LD+ +N
Sbjct: 465 RDWLDLSLN 473
>03_05_1149 + 30753463-30754695,30754834-30755017,30755321-30756549,
30756702-30756816,30757126-30758084
Length = 1239
Score = 28.7 bits (61), Expect = 3.7
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -3
Query: 482 YH*LSRAIAELGIYPAVDPLDSTSRIMDPNIIGAEHYNVARGVQKILQDYKSLQDIIAIL 303
Y+ L EL + P D L + I + + + +A+GV+ +LQ K ++
Sbjct: 942 YYDLQHLATELAVTP--DNLQQSETIAESDAVDPSILGIAKGVEMVLQRLKRIEQ----- 994
Query: 302 GMDELSEE 279
G+ +L EE
Sbjct: 995 GIQDLKEE 1002
>01_03_0260 - 14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Frame = -1
Query: 463 PLLNWVSTQLWI-----LLTQLPVSWTPILLELSTTMLHVEFRKFFRTTN 329
P W+S ++I ++ V+W ++L + ML++ FRK++ +T+
Sbjct: 1079 PFFVWMSVSMYITVIGVVIMTCQVAWPSVVLVVPLLMLNLWFRKYYISTS 1128
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = -2
Query: 162 KGFSKILAGD--YDHLPEVAFYMVGPIEEVVAK 70
KG +++AG + H FYM+ P EEVV K
Sbjct: 163 KGTERLVAGAQLFGHSTRQPFYMIQPSEEVVQK 195
>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
31343927-31344122,31344419-31344602,31344984-31345147,
31345454-31345981,31346530-31346630,31347619-31347634,
31347834-31347941,31348028-31348078,31349059-31349100,
31349442-31349541,31350039-31350256,31350367-31350807,
31350916-31351043,31351131-31351992
Length = 1288
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +1
Query: 79 NLLNRSNHVECYFWQMIIVPC*NFGESFDSFLKWY*FTRMSSEHL 213
N +NR NH++ +FW + ++ NF ++ + WY + S H+
Sbjct: 1240 NNINR-NHLDLFFWLLAVLSFLNF-LNYLFWASWYKYKPQQSAHV 1282
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 319 TLLLFWVWTSCLKK 278
+LLLFW W CLK+
Sbjct: 277 SLLLFWYWEDCLKQ 290
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 194 ACPVNTSATWKGCERNL*IL 253
A P NTS TWKG E L +L
Sbjct: 440 AFPSNTSPTWKGIEHGLELL 459
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,382,499
Number of Sequences: 37544
Number of extensions: 336795
Number of successful extensions: 812
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -